Back to the "Multiple platform build/check report"[A] B  C  D  E  F  G  H  I  J  K  L  M  N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

Package 30/294HostnameOS / ArchBUILDCHECKBUILD BIN
arrayQualityMetrics 1.8.1
Audrey Kauffmann
Bioconductor Changelog
Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/arrayQualityMetrics
Last Changed Rev: 35144 / Revision: 38965
Last Changed Date: 2008-11-07 06:57:18 -0800 (Fri, 07 Nov 2008)
wilson2 Linux (openSUSE 11.1) / x86_64  OK [ OK ]
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.6) / i386  OK  OK  OK 
Package: arrayQualityMetrics
Version: 1.8.1
Command: /home/biocbuild/bbs-2.3-bioc/R/bin/R CMD check --no-vignettes arrayQualityMetrics_1.8.1.tar.gz
StartedAt: 2009-04-18 14:56:49 -0700 (Sat, 18 Apr 2009)
EndedAt: 2009-04-18 14:57:57 -0700 (Sat, 18 Apr 2009)
EllapsedTime: 68.5 seconds
RetCode: 0
Status: OK
CheckDir: arrayQualityMetrics.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.3-bioc/meat/arrayQualityMetrics.Rcheck'
* using R version 2.8.1 (2008-12-22)
* using session charset: UTF-8
* checking for file 'arrayQualityMetrics/DESCRIPTION' ... OK
* this is package 'arrayQualityMetrics' version '1.8.1'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'arrayQualityMetrics' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
arrayQualityMetrics,BeadLevelList: no visible binding for global
  variable ‘sec3text’
arrayQualityMetrics,BeadLevelList: no visible binding for global
  variable ‘gctext’
arrayQualityMetrics,BeadLevelList: no visible binding for global
  variable ‘legendgc’
arrayQualityMetrics,BeadLevelList: no visible binding for global
  variable ‘gotext’
arrayQualityMetrics,BeadLevelList: no visible binding for global
  variable ‘legendgo’
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating arrayQualityMetrics-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating arrayQualityMetrics-manual.tex ... OK
* checking arrayQualityMetrics-manual.tex using pdflatex ... OK

arrayQualityMetrics.Rcheck/00install.out:

* Installing *source* package 'arrayQualityMetrics' ...
** R
** inst
** preparing package for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: geneplotter
Loading required package: lattice
Loading required package: annotate
Loading required package: AnnotationDbi
Loading required package: xtable
KernSmooth 2.22 installed
Copyright M. P. Wand 1997

Attaching package: 'geneplotter'


	The following object(s) are masked from package:lattice :

	 panel.smoothScatter 

Loading required package: genefilter
Loading required package: survival
Loading required package: splines
Loading required package: vsn
Loading required package: affy
Loading required package: limma
Loading required package: RColorBrewer
Loading required package: affyPLM
Loading required package: gcrma
Loading required package: matchprobes
Loading required package: preprocessCore
Loading required package: simpleaffy
Loading required package: latticeExtra
Loading required package: grid
Loading required package: beadarray
Loading required package: hwriter
Loading required package: sma

Attaching package: 'beadarray'


	The following object(s) are masked from package:limma :

	 backgroundCorrect,
	 imageplot,
	 plotMA 

Loading required package: marray

Attaching package: 'marray'


	The following object(s) are masked from package:sma :

	 cor.na,
	 length.na,
	 log.na,
	 mean.na,
	 order.na,
	 prod.na,
	 quantile.na,
	 scale.na,
	 stat.gnames,
	 sum.na,
	 var.na 

** help
 >>> Building/Updating help pages for package 'arrayQualityMetrics'
     Formats: text html latex example 
  XYfromGAL                         text    html    latex
  arrayQualityMetrics               text    html    latex   example
** building package indices ...
* DONE (arrayQualityMetrics)