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Package 12/294HostnameOS / ArchBUILDCHECKBUILD BIN
affyio 1.10.1
Benjamin Milo Bolstad
Bioconductor Changelog
Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/affyio
Last Changed Rev: 34993 / Revision: 38965
Last Changed Date: 2008-10-30 10:29:17 -0700 (Thu, 30 Oct 2008)
wilson2 Linux (openSUSE 11.1) / x86_64  OK  WARNINGS 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  WARNINGS [ OK ]
pitt Mac OS X Tiger (10.4.11) / i386  OK  WARNINGS  OK 
pelham Mac OS X Leopard (10.5.6) / i386  OK  WARNINGS  OK 
Package: affyio
Version: 1.10.1
Command: E:\biocbld\bbs-2.3-bioc\R\bin\R.exe CMD INSTALL --build --library=affyio.buildbin-libdir affyio_1.10.1.tar.gz
StartedAt: 2009-04-18 20:22:18 -0700 (Sat, 18 Apr 2009)
EndedAt: 2009-04-18 20:22:36 -0700 (Sat, 18 Apr 2009)
EllapsedTime: 18.6 seconds
RetCode: 0
Status: OK
PackageFile: affyio_1.10.1.zip
PackageFileSize: 97.89 KiB

Command output

installing R.css in E:/biocbld/bbs-2.3-bioc/meat/affyio.buildbin-libdir

Using auto-selected zip options ''

---------- Making package affyio ------------

   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************

  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  making DLL ...
making fread_functions.d from fread_functions.c
making read_abatch.d from read_abatch.c
making read_bpmap.d from read_bpmap.c
making read_cdf_xda.d from read_cdf_xda.c
making read_cdffile2.d from read_cdffile2.c
making read_celfile_generic.d from read_celfile_generic.c
making read_clf.d from read_clf.c
making read_generic.d from read_generic.c
making read_pgf.d from read_pgf.c
gcc  -std=gnu99 -DHAVE_ZLIB -IE:/biocbld/bbs-2.3-bioc/R/include     -O3 -Wall  -c fread_functions.c -o fread_functions.o
fread_functions.c:301: warning: 'swap_uint_32' defined but not used
gcc  -std=gnu99 -DHAVE_ZLIB -IE:/biocbld/bbs-2.3-bioc/R/include     -O3 -Wall  -c read_abatch.c -o read_abatch.o
gcc  -std=gnu99 -DHAVE_ZLIB -IE:/biocbld/bbs-2.3-bioc/R/include     -O3 -Wall  -c read_bpmap.c -o read_bpmap.o
read_bpmap.c: In function 'ReadBPMAPHeader':
read_bpmap.c:77: warning: unused variable 'version_number_int'
gcc  -std=gnu99 -DHAVE_ZLIB -IE:/biocbld/bbs-2.3-bioc/R/include     -O3 -Wall  -c read_cdf_xda.c -o read_cdf_xda.o
gcc  -std=gnu99 -DHAVE_ZLIB -IE:/biocbld/bbs-2.3-bioc/R/include     -O3 -Wall  -c read_cdffile2.c -o read_cdffile2.o
read_cdffile2.c:363: warning: 'token_ends_with' defined but not used
gcc  -std=gnu99 -DHAVE_ZLIB -IE:/biocbld/bbs-2.3-bioc/R/include     -O3 -Wall  -c read_celfile_generic.c -o read_celfile_generic.o
read_celfile_generic.c: In function 'read_genericcel_file_intensities':
read_celfile_generic.c:697: warning: unused variable 'fread_err'
read_celfile_generic.c:695: warning: unused variable 'cur_index'
read_celfile_generic.c:694: warning: unused variable 'j'
read_celfile_generic.c: In function 'read_genericcel_file_stddev':
read_celfile_generic.c:747: warning: unused variable 'fread_err'
read_celfile_generic.c:745: warning: unused variable 'cur_index'
read_celfile_generic.c:744: warning: unused variable 'j'
read_celfile_generic.c: In function 'read_genericcel_file_npixels':
read_celfile_generic.c:801: warning: unused variable 'fread_err'
read_celfile_generic.c:799: warning: unused variable 'cur_index'
read_celfile_generic.c:798: warning: unused variable 'j'
read_celfile_generic.c: In function 'generic_get_masks_outliers':
read_celfile_generic.c:863: warning: unused variable 'fread_err'
read_celfile_generic.c:861: warning: unused variable 'cur_index'
read_celfile_generic.c:860: warning: unused variable 'j'
read_celfile_generic.c: In function 'generic_apply_masks':
read_celfile_generic.c:955: warning: unused variable 'fread_err'
read_celfile_generic.c:949: warning: unused variable 'j'
read_celfile_generic.c: In function 'gzread_genericcel_file_intensities':
read_celfile_generic.c:1689: warning: unused variable 'fread_err'
read_celfile_generic.c:1687: warning: unused variable 'cur_index'
read_celfile_generic.c:1686: warning: unused variable 'j'
read_celfile_generic.c: In function 'gzread_genericcel_file_stddev':
read_celfile_generic.c:1740: warning: unused variable 'fread_err'
read_celfile_generic.c:1738: warning: unused variable 'cur_index'
read_celfile_generic.c:1737: warning: unused variable 'j'
read_celfile_generic.c: In function 'gzread_genericcel_file_npixels':
read_celfile_generic.c:1794: warning: unused variable 'fread_err'
read_celfile_generic.c:1792: warning: unused variable 'cur_index'
read_celfile_generic.c:1791: warning: unused variable 'j'
read_celfile_generic.c: In function 'gzgeneric_get_masks_outliers':
read_celfile_generic.c:1859: warning: unused variable 'fread_err'
read_celfile_generic.c:1857: warning: unused variable 'cur_index'
read_celfile_generic.c:1856: warning: unused variable 'j'
read_celfile_generic.c: In function 'gzgeneric_apply_masks':
read_celfile_generic.c:1951: warning: unused variable 'fread_err'
read_celfile_generic.c:1945: warning: unused variable 'j'
gcc  -std=gnu99 -DHAVE_ZLIB -IE:/biocbld/bbs-2.3-bioc/R/include     -O3 -Wall  -c read_clf.c -o read_clf.o
read_clf.c: In function 'read_clf_header':
read_clf.c:557: warning: unused variable 'i'
read_clf.c: At top level:
read_clf.c:292: warning: 'token_ends_with' defined but not used
read_clf.c:389: warning: 'IsCommentLine' defined but not used
gcc  -std=gnu99 -DHAVE_ZLIB -IE:/biocbld/bbs-2.3-bioc/R/include     -O3 -Wall  -c read_generic.c -o read_generic.o
read_generic.c: In function 'determine_MIMETYPE':
read_generic.c:398: warning: control reaches end of non-void function
gcc  -std=gnu99 -DHAVE_ZLIB -IE:/biocbld/bbs-2.3-bioc/R/include     -O3 -Wall  -c read_pgf.c -o read_pgf.o
read_pgf.c: In function 'read_pgf_header':
read_pgf.c:901: warning: unused variable 'i'
read_pgf.c: In function 'insert_level0':
read_pgf.c:1167: warning: unused variable 'temp_ptr'
read_pgf.c: In function 'pgf_count_probeset_types':
read_pgf.c:1265: warning: assignment from incompatible pointer type
read_pgf.c: At top level:
read_pgf.c:363: warning: 'token_ends_with' defined but not used
windres --preprocessor="gcc -E -xc -DRC_INVOKED" -I E:/biocbld/bbs-2.3-bioc/R/include  -i affyio_res.rc -o affyio_res.o
gcc  -std=gnu99  -shared -s  -o affyio.dll affyio.def fread_functions.o read_abatch.o read_bpmap.o read_cdf_xda.o read_cdffile2.o read_celfile_generic.o read_clf.o read_generic.o read_pgf.o affyio_res.o  -LE:/biocbld/bbs-2.3-bioc/R/bin -lRzlib   -lR
  ... DLL made
  installing DLL
  installing R files
  preparing package affyio for lazy loading
  installing man source files
  installing indices
  installing help
 >>> Building/Updating help pages for package 'affyio'
     Formats: text html latex example chm 
WARNING: found \itemize inside \value in file 'check.cdf.type.Rd'
WARNING: found \itemize inside \value in file 'check.cdf.type.Rd'
  check.cdf.type                    text    html    latex           chm
  read.cdffile.list                 text    html    latex           chm
  read.celfile                      text    html    latex           chm
  read.celfile.header               text    html    latex           chm
  read.celfile.probeintensity.matri text    html    latex           chm
Microsoft HTML Help Compiler 4.74.8702



Compiling e:\biocbld\bbs-2.3-bioc\meat\R.INSTALL.4300\affyio\chm\affyio.chm





Compile time: 0 minutes, 0 seconds

6	Topics

11	Local links

0	Internet links

1	Graphic





Created e:\biocbld\bbs-2.3-bioc\meat\R.INSTALL.4300\affyio\chm\affyio.chm, 19,627 bytes

Compression increased file by 1,961 bytes.

  adding MD5 sums

packaged installation of package 'affyio' as affyio_1.10.1.zip
* DONE (affyio)