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Package 17/294HostnameOS / ArchBUILDCHECKBUILD BIN
affyQCReport 1.20.0
Craig Parman
Bioconductor Changelog
Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/affyQCReport
Last Changed Rev: 34811 / Revision: 38965
Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008)
wilson2 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.6) / i386  OK  OK  OK 
Package: affyQCReport
Version: 1.20.0
Command: E:\biocbld\bbs-2.3-bioc\R\bin\R.exe CMD check --no-vignettes affyQCReport_1.20.0.tar.gz
StartedAt: 2009-04-18 17:58:35 -0700 (Sat, 18 Apr 2009)
EndedAt: 2009-04-18 18:00:04 -0700 (Sat, 18 Apr 2009)
EllapsedTime: 88.6 seconds
RetCode: 0
Status: OK
CheckDir: affyQCReport.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.3-bioc/meat/affyQCReport.Rcheck'
* using R version 2.8.1 (2008-12-22)
* using session charset: ISO8859-1
* checking for file 'affyQCReport/DESCRIPTION' ... OK
* this is package 'affyQCReport' version '1.20.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'affyQCReport' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating affyQCReport-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating affyQCReport-manual.tex ... OK
* checking affyQCReport-manual.tex using pdflatex ... OK

affyQCReport.Rcheck/00install.out:

installing R.css in E:/biocbld/bbs-2.3-bioc/meat/affyQCReport.Rcheck


---------- Making package affyQCReport ------------
  adding build stamp to DESCRIPTION
  installing R files
  installing inst files
  preparing package affyQCReport for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: affy
Loading required package: simpleaffy
Loading required package: genefilter
Loading required package: survival
Loading required package: splines
Loading required package: gcrma
Loading required package: matchprobes
Loading required package: xtable
Loading required package: affyPLM
Loading required package: preprocessCore
Loading required package: RColorBrewer
Loading required package: geneplotter
Loading required package: lattice
Loading required package: annotate
Loading required package: AnnotationDbi
KernSmooth 2.22 installed
Copyright M. P. Wand 1997

Attaching package: 'geneplotter'


	The following object(s) are masked from package:lattice :

	 panel.smoothScatter 

  installing man source files
  installing indices
  installing help
 >>> Building/Updating help pages for package 'affyQCReport'
     Formats: text html latex example chm 
  QCReport                          text    html    latex   example chm
  affyQAReport                      text    html    latex   example chm
  borderQC1                         text    html    latex   example chm
  borderQC2                         text    html    latex   example chm
  correlationPlot                   text    html    latex   example chm
  signalDist                        text    html    latex   example chm
  titlePage                         text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling e:\biocbld\bbs-2.3-bioc\meat\affyQCReport.Rcheck\00_pkg_src\affyQCReport\chm\affyQCReport.chm


Compile time: 0 minutes, 0 seconds
8	Topics
29	Local links
0	Internet links
1	Graphic


Created e:\biocbld\bbs-2.3-bioc\meat\affyQCReport.Rcheck\00_pkg_src\affyQCReport\chm\affyQCReport.chm, 21,653 bytes
Compression decreased file by 6,091 bytes.
  adding MD5 sums

* DONE (affyQCReport)