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Package 4/294HostnameOS / ArchBUILDCHECKBUILD BIN
adSplit 1.12.0
Claudio Lottaz
Bioconductor Changelog
Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/adSplit
Last Changed Rev: 34811 / Revision: 38965
Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008)
wilson2 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.6) / i386  OK  OK  OK 
Package: adSplit
Version: 1.12.0
Command: E:\biocbld\bbs-2.3-bioc\R\bin\R.exe CMD check --no-vignettes adSplit_1.12.0.tar.gz
StartedAt: 2009-04-18 17:49:23 -0700 (Sat, 18 Apr 2009)
EndedAt: 2009-04-18 17:53:48 -0700 (Sat, 18 Apr 2009)
EllapsedTime: 265.6 seconds
RetCode: 0
Status: OK
CheckDir: adSplit.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.3-bioc/meat/adSplit.Rcheck'
* using R version 2.8.1 (2008-12-22)
* using session charset: ISO8859-1
* checking for file 'adSplit/DESCRIPTION' ... OK
* this is package 'adSplit' version '1.12.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'adSplit' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating adSplit-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating adSplit-manual.tex ... OK
* checking adSplit-manual.tex using pdflatex ... OK

adSplit.Rcheck/00install.out:

installing R.css in E:/biocbld/bbs-2.3-bioc/meat/adSplit.Rcheck


---------- Making package adSplit ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  making DLL ...
making adSplit.d from adSplit.cpp
g++   -Ie:/biocbld/bbs-2.3-bioc/R/include     -O2 -Wall  -c adSplit.cpp -o adSplit.o
adSplit.cpp: In function 'double tscore(double*, int, int, split&, isis_pars&)':
adSplit.cpp:256: warning: deprecated conversion from string constant to 'char*'
adSplit.cpp: In function 'void isis(char**, double*, int*, int*, int*, int*, int*, double*, int*)':
adSplit.cpp:469: warning: deprecated conversion from string constant to 'char*'
windres --preprocessor="gcc -E -xc -DRC_INVOKED" -I e:/biocbld/bbs-2.3-bioc/R/include  -i adSplit_res.rc -o adSplit_res.o
g++   -shared -s  -o adSplit.dll adSplit.def adSplit.o adSplit_res.o  -Le:/biocbld/bbs-2.3-bioc/R/bin    -lR
  ... DLL made
  installing DLL
  installing R files
  installing inst files
  installing data files
  preparing package adSplit for lazy loading
Loading required package: cluster
Loading required package: multtest
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: affy
Loading required package: GO.db
Loading required package: AnnotationDbi
Loading required package: DBI
Loading required package: KEGG.db
  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'adSplit'
     Formats: text html latex example chm 
  adSplit-internal                  text    html    latex           chm
  adSplit                           text    html    latex   example chm
  diana2means                       text    html    latex   example chm
  drawRandomPS                      text    html    latex   example chm
  golubKEGGSplits                   text    html    latex   example chm
  hist.splitSet                     text    html    latex   example chm
  image.splitSet                    text    html    latex   example chm
  makeEID2PROBESenv                 text    html    latex   example chm
  print.split                       text    html    latex           chm
  print.splitSet                    text    html    latex   example chm
  randomDiana2means                 text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling e:\biocbld\bbs-2.3-bioc\meat\adSplit.Rcheck\00_pkg_src\adSplit\chm\adSplit.chm


Compile time: 0 minutes, 0 seconds
12	Topics
30	Local links
0	Internet links
1	Graphic


Created e:\biocbld\bbs-2.3-bioc\meat\adSplit.Rcheck\00_pkg_src\adSplit\chm\adSplit.chm, 28,490 bytes
Compression decreased file by 7,892 bytes.
  adding MD5 sums

* DONE (adSplit)