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Package 255/294HostnameOS / ArchBUILDCHECKBUILD BIN
ScISI 1.14.0
Tony Chiang
Bioconductor Changelog
Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/ScISI
Last Changed Rev: 34811 / Revision: 38965
Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008)
wilson2 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64 [ OK ] OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.6) / i386  OK  OK  OK 
Package: ScISI
Version: 1.14.0
Command: E:\biocbld\bbs-2.3-bioc\R\bin\R.exe CMD build ScISI
StartedAt: 2009-04-18 16:53:36 -0700 (Sat, 18 Apr 2009)
EndedAt: 2009-04-18 16:56:05 -0700 (Sat, 18 Apr 2009)
EllapsedTime: 149.2 seconds
RetCode: 0
Status: OK
PackageFile: ScISI_1.14.0.tar.gz
PackageFileSize: 2.032 MiB

Command output

* checking for file 'ScISI/DESCRIPTION' ... OK
* preparing 'ScISI':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
installing R.css in E:/biocbld/bbs-2.3-bioc/tmpdir/Rinst492431848


---------- Making package ScISI ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  installing R files
  installing inst files
  installing data files
  preparing package ScISI for lazy loading
Loading required package: apComplex
Loading required package: graph
Loading required package: RBGL
Loading required package: Rgraphviz
Loading required package: grid
Loading required package: org.Sc.sgd.db
Loading required package: AnnotationDbi
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: DBI
Loading required package: GO.db
Loading required package: GOstats
Loading required package: annotate
Loading required package: xtable

Attaching package: 'annotate'


	The following object(s) are masked from package:Rgraphviz :

	 toFile 

Loading required package: Category
Loading required package: genefilter
Loading required package: survival
Loading required package: splines
Loading required package: RpsiXML
Loading required package: XML

Attaching package: 'XML'


	The following object(s) are masked from package:graph :

	 addNode 

Loading required package: hypergraph

Attaching package: 'hypergraph'


	The following object(s) are masked from package:xtable :

	 label,
	 label<- 


	The following object(s) are masked from package:AnnotationDbi :

	 head,
	 tail 


	The following object(s) are masked from package:Rgraphviz :

	 head,
	 tail 


	The following object(s) are masked from package:utils :

	 head,
	 tail 

  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'ScISI'
     Formats: text html latex example chm 
  Desc-methods                      text    html    latex           chm
  ID-methods                        text    html    latex           chm
  JaccardCoef                       text    html    latex   example chm
  ScISI                             text    html    latex   example chm
  ScISI2html                        text    html    latex   example chm
  arp23                             text    html    latex   example chm
  arp23G                            text    html    latex   example chm
Note: removing empty section \details in file 'arp23Orf.Rd'
Note: removing empty section \details in file 'arp23Orf.Rd'
  arp23Orf                          text    html    latex   example chm
  arp23Y2HG                         text    html    latex   example chm
Note: removing empty section \references in file 'calcGraphStats.Rd'
Note: removing empty section \examples in file 'calcGraphStats.Rd'
Note: removing empty section \references in file 'calcGraphStats.Rd'
Note: removing empty section \examples in file 'calcGraphStats.Rd'
  calcGraphStats                    text    html    latex           chm
  cfia                              text    html    latex   example chm
  cfiaOrf                           text    html    latex   example chm
Note: removing empty section \examples in file 'checkComplex.Rd'
Note: removing empty section \examples in file 'checkComplex.Rd'
  checkComplex                      text    html    latex           chm
Note: removing empty section \note in file 'checkSGN.Rd'
Note: removing empty section \examples in file 'checkSGN.Rd'
Note: removing empty section \note in file 'checkSGN.Rd'
Note: removing empty section \examples in file 'checkSGN.Rd'
  checkSGN                          text    html    latex           chm
Note: removing empty section \examples in file 'compBijection.Rd'
Note: removing empty section \examples in file 'compBijection.Rd'
  compBijection                     text    html    latex           chm
Note: removing empty section \examples in file 'compareComplex.Rd'
Note: removing empty section \examples in file 'compareComplex.Rd'
  compareComplex                    text    html    latex           chm
  createGODataFrame                 text    html    latex   example chm
  createGOMatrix                    text    html    latex   example chm
Note: removing empty section \examples in file 'createMipsDataFrame.Rd'
Note: removing empty section \examples in file 'createMipsDataFrame.Rd'
  createMipsDataFrame               text    html    latex           chm
  createMipsMatrix                  text    html    latex   example chm
  createYeastDataObj                text    html    latex   example chm
  dataS                             text    html    latex   example chm
  eAt                               text    html    latex   example chm
  eAt2                              text    html    latex   example chm
Note: removing empty section \details in file 'edgeProp.Rd'
Note: removing empty section \examples in file 'edgeProp.Rd'
Note: removing empty section \details in file 'edgeProp.Rd'
Note: removing empty section \examples in file 'edgeProp.Rd'
  edgeProp                          text    html    latex           chm
  egEBI16112                        text    html    latex   example chm
  expStats                          text    html    latex   example chm
  findSubComp                       text    html    latex   example chm
  gavin2mergeMG                     text    html    latex   example chm
  getAPMSData                       text    html    latex   example chm
  getGOInfo                         text    html    latex   example chm
Note: removing empty section \examples in file 'getLocOrfs.Rd'
Note: removing empty section \examples in file 'getLocOrfs.Rd'
  getLocOrfs                        text    html    latex           chm
  getMipsInfo                       text    html    latex   example chm
  getURL-methods                    text    html    latex           chm
Note: removing empty section \details in file 'graphSumStats.Rd'
Note: removing empty section \examples in file 'graphSumStats.Rd'
Note: removing empty section \details in file 'graphSumStats.Rd'
Note: removing empty section \examples in file 'graphSumStats.Rd'
  graphSumStats                     text    html    latex           chm
  ho2mergeMGG                       text    html    latex   example chm
  krogan2mergeMGGH                  text    html    latex   example chm
  locScISI                          text    html    latex   example chm
  mapping2SysG                      text    html    latex   example chm
  mappingsG                         text    html    latex   example chm
  maximizeSimilarity                text    html    latex   example chm
Note: removing empty section \details in file 'meanDeg.Rd'
Note: removing empty section \examples in file 'meanDeg.Rd'
Note: removing empty section \details in file 'meanDeg.Rd'
Note: removing empty section \examples in file 'meanDeg.Rd'
  meanDeg                           text    html    latex           chm
  mergeBGMat                        text    html    latex   example chm
  mips2go                           text    html    latex   example chm
  nAt                               text    html    latex           chm
  nAtMap                            text    html    latex   example chm
  nonGenes                          text    html    latex   example chm
  nucComp                           text    html    latex   example chm
  recCompSize                       text    html    latex   example chm
  redundantM                        text    html    latex   example chm
Note: removing empty section \examples in file 'rmByEvi.Rd'
Note: removing empty section \examples in file 'rmByEvi.Rd'
  rmByEvi                           text    html    latex           chm
  runAlignment                      text    html    latex   example chm
Note: removing empty section \details in file 'runCompareComplex.Rd'
Note: removing empty section \details in file 'runCompareComplex.Rd'
  runCompareComplex                 text    html    latex   example chm
Note: removing empty section \details in file 'subCompM.Rd'
Note: removing empty section \details in file 'subCompM.Rd'
  subCompM                          text    html    latex   example chm
Note: removing empty section \details in file 'sumStats.Rd'
Note: removing empty section \details in file 'sumStats.Rd'
  sumStats                          text    html    latex   example chm
  unWantedComp                      text    html    latex   example chm
  unwanted                          text    html    latex   example chm
  xtraGO                            text    html    latex   example chm
Note: removing empty section \examples in file 'xtraGONodes.Rd'
Note: removing empty section \examples in file 'xtraGONodes.Rd'
  xtraGONodes                       text    html    latex           chm
  yeastData-class                   text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702



Compiling e:\biocbld\bbs-2.3-bioc\meat\ScISI\chm\ScISI.chm





Compile time: 0 minutes, 1 second

61	Topics

148	Local links

0	Internet links

1	Graphic





Created e:\biocbld\bbs-2.3-bioc\meat\ScISI\chm\ScISI.chm, 71,984 bytes

Compression decreased file by 87,136 bytes.

  adding MD5 sums

* DONE (ScISI)
* creating vignettes ... OK
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'ScISI_1.14.0.tar.gz'