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Package 268/294HostnameOS / ArchBUILDCHECKBUILD BIN
SNPchip 1.6.0
Robert Scharpf
Bioconductor Changelog
Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/SNPchip
Last Changed Rev: 34811 / Revision: 38965
Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008)
wilson2 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64 [ OK ] OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.6) / i386  OK  OK  OK 
Package: SNPchip
Version: 1.6.0
Command: E:\biocbld\bbs-2.3-bioc\R\bin\R.exe CMD build SNPchip
StartedAt: 2009-04-18 16:56:02 -0700 (Sat, 18 Apr 2009)
EndedAt: 2009-04-18 16:56:50 -0700 (Sat, 18 Apr 2009)
EllapsedTime: 48.4 seconds
RetCode: 0
Status: OK
PackageFile: SNPchip_1.6.0.tar.gz
PackageFileSize: 2.373 MiB

Command output

* checking for file 'SNPchip/DESCRIPTION' ... OK
* preparing 'SNPchip':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
installing R.css in E:/biocbld/bbs-2.3-bioc/tmpdir/Rinst461265109


---------- Making package SNPchip ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  installing R files
  installing inst files
  installing data files
  preparing package SNPchip for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: oligoClasses
Creating a new generic function for "summary" in "SNPchip"
Creating a new generic function for "plot" in "SNPchip"
  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'SNPchip'
     Formats: text html latex example chm 
  HmmPredict-class                  text    html    latex   example chm
  ParESet-class                     text    html    latex   example chm
  ParSnpCallSet-class               text    html    latex   example chm
  ParSnpCopyNumberSet-class         text    html    latex   example chm
  ParSnpSet-class                   text    html    latex   example chm
  RatioSnpSet-class                 text    html    latex   example chm
  RatioSnpSet-methods               text    html    latex           chm
  addFeatureData-method             text    html    latex           chm
  alleleA                           text    html    latex           chm
  alleleB                           text    html    latex           chm
  centromere                        text    html    latex   example chm
  chromosome2integer                text    html    latex           chm
  chromosomeAnnotation              text    html    latex   example chm
  chromosomeSize                    text    html    latex   example chm
  coerce-methods                    text    html    latex           chm
  crlmmOut                          text    html    latex   example chm
  cytoband                          text    html    latex   example chm
  dbSnpId                           text    html    latex   example chm
  enzyme                            text    html    latex           chm
  featureData-accessors             text    html    latex           chm
  fragmentLength                    text    html    latex           chm
  getPar                            text    html    latex           chm
  hapmap                            text    html    latex   example chm
  hmmPredict                        text    html    latex           chm
  plotCytoband                      text    html    latex   example chm
  plotPredictions                   text    html    latex   example chm
  plotSnp                           text    html    latex   example chm
Note: removing empty section \source in file 'sample.snpset.Rd'
Note: removing empty section \details in file 'sample.snpset.Rd'
Note: removing empty section \references in file 'sample.snpset.Rd'
Note: removing empty section \source in file 'sample.snpset.Rd'
Note: removing empty section \details in file 'sample.snpset.Rd'
Note: removing empty section \references in file 'sample.snpset.Rd'
  sample.snpset                     text    html    latex   example chm
Note: removing empty section \author in file 'selectSomeIndex.Rd'
Note: removing empty section \details in file 'selectSomeIndex.Rd'
Note: removing empty section \note in file 'selectSomeIndex.Rd'
Note: removing empty section \references in file 'selectSomeIndex.Rd'
Note: removing empty section \examples in file 'selectSomeIndex.Rd'
Note: removing empty section \seealso in file 'selectSomeIndex.Rd'
Note: removing empty section \author in file 'selectSomeIndex.Rd'
Note: removing empty section \details in file 'selectSomeIndex.Rd'
Note: removing empty section \note in file 'selectSomeIndex.Rd'
Note: removing empty section \references in file 'selectSomeIndex.Rd'
Note: removing empty section \examples in file 'selectSomeIndex.Rd'
Note: removing empty section \seealso in file 'selectSomeIndex.Rd'
  selectSomeIndex                   text    html    latex           chm
  show-methods                      text    html    latex           chm
Note: removing empty section \value in file 'showSummary.Rd'
Note: removing empty section \details in file 'showSummary.Rd'
Note: removing empty section \note in file 'showSummary.Rd'
Note: removing empty section \references in file 'showSummary.Rd'
Note: removing empty section \examples in file 'showSummary.Rd'
Note: removing empty section \value in file 'showSummary.Rd'
Note: removing empty section \details in file 'showSummary.Rd'
Note: removing empty section \note in file 'showSummary.Rd'
Note: removing empty section \references in file 'showSummary.Rd'
Note: removing empty section \examples in file 'showSummary.Rd'
  showSummary                       text    html    latex           chm
  smoothSnp                         text    html    latex           chm
  snpPar                            text    html    latex   example chm
  snpset                            text    html    latex           chm
  summary-methods                   text    html    latex           chm
  updateObject-methods              text    html    latex           chm
Microsoft HTML Help Compiler 4.74.8702



Compiling e:\biocbld\bbs-2.3-bioc\meat\SNPchip\chm\SNPchip.chm





Compile time: 0 minutes, 0 seconds

37	Topics

166	Local links

1	Internet link

1	Graphic





Created e:\biocbld\bbs-2.3-bioc\meat\SNPchip\chm\SNPchip.chm, 40,204 bytes

Compression decreased file by 68,495 bytes.

  adding MD5 sums

* DONE (SNPchip)
* creating vignettes ... OK
* removing junk files
* excluding invalid files from 'SNPchip'
Subdirectory 'man' contains invalid file names:
  .calculateYlim.Rd
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'SNPchip_1.6.0.tar.gz'