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Package 260/294HostnameOS / ArchBUILDCHECKBUILD BIN
SIM 1.10.0
Maarten van Iterson
Bioconductor Changelog
Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/SIM
Last Changed Rev: 34811 / Revision: 38965
Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008)
wilson2 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK [ OK ]
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.6) / i386  OK  OK  OK 
Package: SIM
Version: 1.10.0
Command: E:\biocbld\bbs-2.3-bioc\R\bin\R.exe CMD INSTALL --build --library=SIM.buildbin-libdir SIM_1.10.0.tar.gz
StartedAt: 2009-04-18 20:54:24 -0700 (Sat, 18 Apr 2009)
EndedAt: 2009-04-18 20:54:47 -0700 (Sat, 18 Apr 2009)
EllapsedTime: 23.1 seconds
RetCode: 0
Status: OK
PackageFile: SIM_1.10.0.zip
PackageFileSize: 658.2 KiB

Command output

installing R.css in E:/biocbld/bbs-2.3-bioc/meat/SIM.buildbin-libdir

Using auto-selected zip options ' SIM-HELP=ziponly'

---------- Making package SIM ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  installing R files
  installing inst files
  installing data files
  preparing package SIM for lazy loading
Loading required package: fields
Loading required package: spam

Attaching package: 'spam'


	The following object(s) are masked from package:base :

	 backsolve,
	 forwardsolve 

Loading required package: globaltest
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: marray
Loading required package: limma
Loading required package: quantsmooth
Loading required package: quantreg
Loading required package: SparseM

Attaching package: 'SparseM'


	The following object(s) are masked from package:spam :

	 backsolve,
	 chol,
	 norm 


	The following object(s) are masked from package:stats :

	 model.response 


	The following object(s) are masked from package:base :

	 backsolve,
	 chol 

Loading required package: lodplot
Loading required package: grid
Loading required package: clac
Loading required package: multtest
Warning in namespaceImportFrom(self, asNamespace(ns)) :
  replacing previous import: summary
  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'SIM'
     Formats: text html latex example chm 
  A4                                text    html    latex   example chm
  RESOURCERER.annotation.to.ID      text    html    latex   example chm
  SIM-package                       text    html    latex   example chm
  acgh.data                         text    html    latex   example chm
  acgh.heatmap.with.heatmap         text    html    latex   example chm
  adj.bhfdr                         text    html    latex   example chm
  adj.byfdr                         text    html    latex   example chm
  assemble.data                     text    html    latex   example chm
  chrom.table                       text    html    latex   example chm
  collapse.arms                     text    html    latex   example chm
  collapse.bands                    text    html    latex   example chm
  create.color.vector               text    html    latex   example chm
  expr.data                         text    html    latex   example chm
  get.abs.start                     text    html    latex   example chm
  get.indep.zscores                 text    html    latex   example chm
  get.pvals                         text    html    latex   example chm
  get.start.input.regions           text    html    latex   example chm
  heatmap.with.clac.plot            text    html    latex   example chm
  heatmap.with.plot                 text    html    latex   example chm
  impute.nas.by.surrounding         text    html    latex   example chm
  integrated.analysis               text    html    latex   example chm
  link.metadata                     text    html    latex   example chm
  make.Normal.data                  text    html    latex   example chm
  quantsmooth.heatmap               text    html    latex   example chm
  run.ia                            text    html    latex   example chm
  samples                           text    html    latex   example chm
  sim.plot.adj.pvals                text    html    latex   example chm
  sim.plot.pvals.on.genome          text    html    latex   example chm
  sim.plot.pvals.on.region          text    html    latex   example chm
  sim.plot.zscore.heatmap           text    html    latex   example chm
  sim.update.chrom.table            text    html    latex   example chm
  tabulate.pvals                    text    html    latex   example chm
  tabulate.top.dep.features         text    html    latex   example chm
  tabulate.top.indep.features       text    html    latex   example chm
  writeln                           text    html    latex   example chm
  zipping help files
Microsoft HTML Help Compiler 4.74.8702



Compiling e:\biocbld\bbs-2.3-bioc\meat\R.INSTALL.5480\SIM\chm\SIM.chm





Compile time: 0 minutes, 1 second

36	Topics

219	Local links

0	Internet links

1	Graphic





Created e:\biocbld\bbs-2.3-bioc\meat\R.INSTALL.5480\SIM\chm\SIM.chm, 64,410 bytes

Compression decreased file by 94,680 bytes.

  adding MD5 sums

packaged installation of package 'SIM' as SIM_1.10.0.zip
* DONE (SIM)