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Package 238/294HostnameOS / ArchBUILDCHECKBUILD BIN
Rintact 1.4.0
Tony Chiang
Bioconductor Changelog
Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/Rintact
Last Changed Rev: 34811 / Revision: 38965
Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008)
wilson2 Linux (openSUSE 11.1) / x86_64  OK [ OK ]
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.6) / i386  OK  OK  OK 
Package: Rintact
Version: 1.4.0
Command: /home/biocbuild/bbs-2.3-bioc/R/bin/R CMD check --no-vignettes Rintact_1.4.0.tar.gz
StartedAt: 2009-04-18 16:31:30 -0700 (Sat, 18 Apr 2009)
EndedAt: 2009-04-18 16:32:06 -0700 (Sat, 18 Apr 2009)
EllapsedTime: 36.5 seconds
RetCode: 0
Status: OK
CheckDir: Rintact.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.3-bioc/meat/Rintact.Rcheck'
* using R version 2.8.1 (2008-12-22)
* using session charset: UTF-8
* checking for file 'Rintact/DESCRIPTION' ... OK
* this is package 'Rintact' version '1.4.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'Rintact' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
eListHandler : startElement: no visible binding for '<<-' assignment to
  ‘curEL’
eListHandler : startElement: no visible binding for global variable
  ‘curEL’
eListHandler : text: no visible binding for global variable ‘curEL’
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating Rintact-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating Rintact-manual.tex ... OK
* checking Rintact-manual.tex using pdflatex ... OK

Rintact.Rcheck/00install.out:

* Installing *source* package 'Rintact' ...
** R
** inst
** preparing package for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: XML
Loading required package: graph

Attaching package: 'graph'


	The following object(s) are masked from package:XML :

	 addNode 

Loading required package: hypergraph

Attaching package: 'hypergraph'


	The following object(s) are masked from package:utils :

	 head,
	 tail 

Loading required package: RBGL
** help
 >>> Building/Updating help pages for package 'Rintact'
     Formats: text html latex example 
  bait                              text    html    latex   example
  complexEntry                      text    html    latex
  complexes                         text    html    latex   example
  eListHandler                      text    html    latex   example
  intactComplex                     text    html    latex
  intactGraph                       text    html    latex
  intactHyperGraph                  text    html    latex
  intactInteraction                 text    html    latex
Note: removing empty section \examples in file 'intactXML2Graph.Rd'
  intactXML2Graph                   text    html    latex
  interactionEntry                  text    html    latex
  interactions                      text    html    latex   example
  interactors                       text    html    latex   example
Note: removing empty section \references in file 'list2Matrix.Rd'
  list2Matrix                       text    html    latex   example
  organismName                      text    html    latex   example
  prey                              text    html    latex   example
  psi25interaction                  text    html    latex   example
  releaseDate                       text    html    latex   example
Note: removing empty section \examples in file 'separateXMLDataByExpt.Rd'
  separateXMLDataByExpt             text    html    latex
  taxId                             text    html    latex   example
  translateIntactID                 text    html    latex   example
  translateNodeID                   text    html    latex   example
** building package indices ...
* DONE (Rintact)