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Package 230/294HostnameOS / ArchBUILDCHECKBUILD BIN
Rdisop 1.2.0
Steffen Neumann
Bioconductor Changelog
Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/Rdisop
Last Changed Rev: 34811 / Revision: 38965
Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008)
wilson2 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64 [ OK ] OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386 N O T   S U P P O R T E D
pelham Mac OS X Leopard (10.5.6) / i386 N O T   S U P P O R T E D
Package: Rdisop
Version: 1.2.0
Command: E:\biocbld\bbs-2.3-bioc\R\bin\R.exe CMD build Rdisop
StartedAt: 2009-04-18 17:24:15 -0700 (Sat, 18 Apr 2009)
EndedAt: 2009-04-18 17:24:57 -0700 (Sat, 18 Apr 2009)
EllapsedTime: 41.2 seconds
RetCode: 0
Status: OK
PackageFile: Rdisop_1.2.0.tar.gz
PackageFileSize: 1.954 MiB

Command output

* checking for file 'Rdisop/DESCRIPTION' ... OK
* preparing 'Rdisop':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
installing R.css in E:/biocbld/bbs-2.3-bioc/tmpdir/Rinst492873767


---------- Making package Rdisop ------------
Building libRcpp.a in RcppSrc...
g++ -c Rcpp.cpp -o Rcpp.o -I"e:\biocbld\bbs-2.3-bioc\R/include" -I"e:\biocbld\bbs-2.3-bioc\R/src/include"  -Wall -O2
ar r libRcpp.a Rcpp.o
c:\Rtools\MinGW\bin\ar.exe: creating libRcpp.a
ranlib libRcpp.a
rm Rcpp.o
Building imslib.dll in src/imslib...
ls: cannot access src/win/libims*.dll: No such file or directory
total 5488
-rw-r--r-- 1 biocbuild None 2806048 Apr 18 17:24 libims-0.dll
-rwxr-xr-x 1 biocbuild None 2806048 Apr 18 17:24 libims.dll
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  making DLL ...
making disop.d from disop.cpp
g++   -Ie:/biocbld/bbs-2.3-bioc/R/include   -I./imslib/src -I../RcppSrc/  -O2 -Wall  -c disop.cpp -o disop.o
disop.cpp: In function 'bool isValidMyNitrogenRule(const ims::ComposedElement&, int)':
disop.cpp:122: warning: unused variable 'parityeven'
disop.cpp: In function 'SEXPREC* decomposeIsotopes(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)':
disop.cpp:207: warning: comparison between signed and unsigned integer expressions
disop.cpp:210: warning: comparison between signed and unsigned integer expressions
disop.cpp:218: warning: comparison between signed and unsigned integer expressions
disop.cpp:218: warning: comparison between signed and unsigned integer expressions
disop.cpp:171: warning: unused variable 'number_molecules_shown'
disop.cpp: In function 'SEXPREC* calculateScore(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)':
disop.cpp:353: warning: comparison between signed and unsigned integer expressions
disop.cpp:353: warning: comparison between signed and unsigned integer expressions
disop.cpp:370: warning: comparison between signed and unsigned integer expressions
disop.cpp:373: warning: comparison between signed and unsigned integer expressions
disop.cpp:377: warning: comparison between signed and unsigned integer expressions
disop.cpp:377: warning: comparison between signed and unsigned integer expressions
disop.cpp: In function 'void initializeAlphabet(SEXPREC*, alphabet_t&)':
disop.cpp:789: warning: deprecated conversion from string constant to 'char*'
disop.cpp:791: warning: deprecated conversion from string constant to 'char*'
disop.cpp:793: warning: deprecated conversion from string constant to 'char*'
disop.cpp:795: warning: deprecated conversion from string constant to 'char*'
disop.cpp:796: warning: deprecated conversion from string constant to 'char*'
disop.cpp:797: warning: deprecated conversion from string constant to 'char*'
windres --preprocessor="gcc -E -xc -DRC_INVOKED" -I e:/biocbld/bbs-2.3-bioc/R/include  -i Rdisop_res.rc -o Rdisop_res.o
g++   -shared -s  -o Rdisop.dll Rdisop.def disop.o Rdisop_res.o  -Le:/biocbld/bbs-2.3-bioc/R/bin -L./winlibs -lims -L../RcppSrc/ -lRcpp   -lR
Info: resolving ims::IsotopeDistribution::SIZE      by linking to __imp___ZN3ims19IsotopeDistribution4SIZEE (auto-import)
Info: resolving ims::IsotopeDistribution::ABUNDANCES_SUM_ERROR       by linking to __imp___ZN3ims19IsotopeDistribution20ABUNDANCES_SUM_ERRORE (auto-import)
Info: resolving vtable for ims::Alphabetby linking to __imp___ZTVN3ims8AlphabetE (auto-importc:/rtools/mingw/bin/../lib/gcc/mingw32/4.2.1-sjlj/../../../../mingw32/bin/ld.exe: warning: auto-importing has been activated without --enable-auto-import specified on the command line.
This should work unless it involves constant data structures referencing symbols from auto-imported DLLs.)

  ... DLL made
  installing DLL
  installing R files
  installing inst files
  preparing package Rdisop for lazy loading
  installing man source files
  installing indices
  installing help
 >>> Building/Updating help pages for package 'Rdisop'
     Formats: text html latex example chm 
  RcppVersion                       text    html    latex   example chm
  addMolecules                      text    html    latex   example chm
  decomposeMass                     text    html    latex   example chm
  getMolecule                       text    html    latex   example chm
  initializeCHNOPS                  text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702



Compiling e:\biocbld\bbs-2.3-bioc\meat\Rdisop\chm\Rdisop.chm





Compile time: 0 minutes, 0 seconds

6	Topics

25	Local links

0	Internet links

1	Graphic





Created e:\biocbld\bbs-2.3-bioc\meat\Rdisop\chm\Rdisop.chm, 21,361 bytes

Compression decreased file by 2,124 bytes.

  adding MD5 sums

* DONE (Rdisop)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'Rdisop_1.2.0.tar.gz'