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Package 229/294HostnameOS / ArchBUILDCHECKBUILD BIN
RdbiPgSQL 1.16.0
Jianhua Zhang
Bioconductor Changelog
Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/RdbiPgSQL
Last Changed Rev: 34811 / Revision: 38965
Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008)
wilson2 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64 N O T   S U P P O R T E D
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.6) / i386  OK  OK [ OK ]
Package: RdbiPgSQL
Version: 1.16.0
Command: /Users/biocbuild/BBS/utils/build-universal.sh RdbiPgSQL_1.16.0.tar.gz /Library/Frameworks/R.framework/Versions/2.8/Resources/bin/R RdbiPgSQL.buildbin-libdir
StartedAt: 2009-04-18 18:56:51 -0700 (Sat, 18 Apr 2009)
EndedAt: 2009-04-18 18:57:03 -0700 (Sat, 18 Apr 2009)
EllapsedTime: 12.5 seconds
RetCode: 0
Status: OK
PackageFile: RdbiPgSQL_1.16.0.tgz
PackageFileSize: 47.83 KiB

Command output

                INSTALLATION WITH 'R CMD INSTALL --library=RdbiPgSQL.buildbin-libdir RdbiPgSQL_1.16.0.tar.gz'

* Installing *source* package 'RdbiPgSQL' ...
creating cache ./config.cache
checking for PQconnectdb in -lpq... yes
checking how to run the C preprocessor... cc -E
checking for /usr/include/libpq-fe.h... no
checking how to run the C preprocessor... cc -E
checking for /usr/include/pgsql/libpq-fe.h... no
checking how to run the C preprocessor... cc -E
checking for /usr/include/postgresql/libpq-fe.h... no
checking how to run the C preprocessor... cc -E
checking for /usr/local/include/libpq-fe.h... no
checking how to run the C preprocessor... cc -E
checking for /usr/local/include/pgsql/libpq-fe.h... yes
updating cache ./config.cache
creating ./config.status
creating src/Makevars
** libs
** arch - i386
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/i386 -I/usr/local/include/pgsql -I/usr/local/include    -fPIC  -g -O2 -Wall -c PgSQL.c -o PgSQL.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/i386 -I/usr/local/include/pgsql -I/usr/local/include    -fPIC  -g -O2 -Wall -c PgSQLInit.c -o PgSQLInit.o
PgSQL.h:9: warning: 'mkInteger' defined but not used
PgSQL.h:18: warning: 'mkLogical' defined but not used
PgSQL.h:27: warning: 'mkString_safe' defined but not used
PgSQL.h:33: warning: 'fetchPgString' defined but not used
PgSQL.h:46: warning: 'fetchPgInteger' defined but not used
PgSQL.h:66: warning: 'fetchPgDouble' defined but not used
PgSQL.h:89: warning: 'fetchPgLogical' defined but not used
gcc-4.2 -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names  -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o RdbiPgSQL.so PgSQL.o PgSQLInit.o -lpq  -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** R
** preparing package for lazy loading
Loading required package: Rdbi
** help
 >>> Building/Updating help pages for package 'RdbiPgSQL'
     Formats: text html latex example 
  PgSQL                             text    html    latex
  dbAppendTable.PgSQL.conn          text    html    latex
Note: removing empty section \usage in file 'dbAppendTable.Rd'
Note: removing empty section \arguments in file 'dbAppendTable.Rd'
  dbAppendTable                     text    html    latex
  dbClearResult.PgSQL.result        text    html    latex
  dbColumnInfo.PgSQL.result         text    html    latex
  dbConnect.PgSQL                   text    html    latex
  dbConnectionInfo.PgSQL.conn       text    html    latex
  dbDisconnect.PgSQL.conn           text    html    latex
  dbGetQuery.PgSQL.conn             text    html    latex
  dbGetResult.PgSQL.result          text    html    latex
  dbListTables.PgSQL.conn           text    html    latex
  dbReadTable.PgSQL.conn            text    html    latex
  dbResultInfo.PgSQL.result         text    html    latex
  dbSendQuery.PgSQL.conn            text    html    latex
  dbWriteTable.PgSQL.conn           text    html    latex
Note: removing empty section \usage in file 'internal.Rd'
Note: removing empty section \arguments in file 'internal.Rd'
  internal                          text    html    latex
  psql                              text    html    latex
** building package indices ...
* DONE (RdbiPgSQL)

                INSTALLATION OF ppc LIBS WITH 'R_ARCH=/ppc R CMD INSTALL --library=RdbiPgSQL.buildbin-libdir --libs-only RdbiPgSQL_1.16.0.tar.gz'

* Installing *source* package 'RdbiPgSQL' ...
creating cache ./config.cache
checking for PQconnectdb in -lpq... yes
checking how to run the C preprocessor... cc -E
checking for /usr/include/libpq-fe.h... no
checking how to run the C preprocessor... cc -E
checking for /usr/include/pgsql/libpq-fe.h... no
checking how to run the C preprocessor... cc -E
checking for /usr/include/postgresql/libpq-fe.h... no
checking how to run the C preprocessor... cc -E
checking for /usr/local/include/libpq-fe.h... no
checking how to run the C preprocessor... cc -E
checking for /usr/local/include/pgsql/libpq-fe.h... yes
updating cache ./config.cache
creating ./config.status
creating src/Makevars
** libs
** arch - ppc
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/ppc -I/usr/local/include/pgsql -I/usr/local/include    -fPIC  -g -O2 -Wall -c PgSQL.c -o PgSQL.o
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/ppc -I/usr/local/include/pgsql -I/usr/local/include    -fPIC  -g -O2 -Wall -c PgSQLInit.c -o PgSQLInit.o
PgSQL.h:9: warning: 'mkInteger' defined but not used
PgSQL.h:18: warning: 'mkLogical' defined but not used
PgSQL.h:27: warning: 'mkString_safe' defined but not used
PgSQL.h:33: warning: 'fetchPgString' defined but not used
PgSQL.h:46: warning: 'fetchPgInteger' defined but not used
PgSQL.h:66: warning: 'fetchPgDouble' defined but not used
PgSQL.h:89: warning: 'fetchPgLogical' defined but not used
gcc-4.2 -arch ppc -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names  -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o RdbiPgSQL.so PgSQL.o PgSQLInit.o -lpq  -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
* DONE (RdbiPgSQL)

                INSTALLATION OF x86_64 LIBS WITH 'R_ARCH=/x86_64 R CMD INSTALL --library=RdbiPgSQL.buildbin-libdir --libs-only RdbiPgSQL_1.16.0.tar.gz'

* Installing *source* package 'RdbiPgSQL' ...
creating cache ./config.cache
checking for PQconnectdb in -lpq... yes
checking how to run the C preprocessor... cc -E
checking for /usr/include/libpq-fe.h... no
checking how to run the C preprocessor... cc -E
checking for /usr/include/pgsql/libpq-fe.h... no
checking how to run the C preprocessor... cc -E
checking for /usr/include/postgresql/libpq-fe.h... no
checking how to run the C preprocessor... cc -E
checking for /usr/local/include/libpq-fe.h... no
checking how to run the C preprocessor... cc -E
checking for /usr/local/include/pgsql/libpq-fe.h... yes
updating cache ./config.cache
creating ./config.status
creating src/Makevars
** libs
** arch - x86_64
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/x86_64 -I/usr/local/include/pgsql -I/usr/local/include    -fPIC  -g -O2 -Wall -c PgSQL.c -o PgSQL.o
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/x86_64 -I/usr/local/include/pgsql -I/usr/local/include    -fPIC  -g -O2 -Wall -c PgSQLInit.c -o PgSQLInit.o
PgSQL.h:9: warning: 'mkInteger' defined but not used
PgSQL.h:18: warning: 'mkLogical' defined but not used
PgSQL.h:27: warning: 'mkString_safe' defined but not used
PgSQL.h:33: warning: 'fetchPgString' defined but not used
PgSQL.h:46: warning: 'fetchPgInteger' defined but not used
PgSQL.h:66: warning: 'fetchPgDouble' defined but not used
PgSQL.h:89: warning: 'fetchPgLogical' defined but not used
gcc-4.2 -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names  -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o RdbiPgSQL.so PgSQL.o PgSQLInit.o -lpq  -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
ld: warning in /usr/local/lib/libpq.dylib, missing required architecture x86_64 in file
* DONE (RdbiPgSQL)