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Package 225/294HostnameOS / ArchBUILDCHECKBUILD BIN
RBGL 1.18.0
Li Long
Bioconductor Changelog
Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/RBGL
Last Changed Rev: 34811 / Revision: 38965
Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008)
wilson2 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  WARNINGS  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK [ OK ]
pelham Mac OS X Leopard (10.5.6) / i386  OK  WARNINGS  OK 
Package: RBGL
Version: 1.18.0
Command: /Users/biocbuild/BBS/utils/build-universal.sh RBGL_1.18.0.tar.gz /Library/Frameworks/R.framework/Versions/2.8/Resources/bin/R RBGL.buildbin-libdir
StartedAt: 2009-04-18 18:34:36 -0700 (Sat, 18 Apr 2009)
EndedAt: 2009-04-18 18:38:55 -0700 (Sat, 18 Apr 2009)
EllapsedTime: 259.5 seconds
RetCode: 0
Status: OK
PackageFile: RBGL_1.18.0.tgz
PackageFileSize: 1.02 MiB

Command output

                INSTALLATION WITH 'R CMD INSTALL --library=RBGL.buildbin-libdir RBGL_1.18.0.tar.gz'

* Installing *source* package 'RBGL' ...
untarring boost include tree...
** libs
** arch - i386
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/i386  -I/usr/local/include   -IboostIncl  -fPIC  -g -O2 -c bbc.cpp -o bbc.o
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/i386  -I/usr/local/include   -IboostIncl  -fPIC  -g -O2 -c cliques.cpp -o cliques.o
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/i386  -I/usr/local/include   -IboostIncl  -fPIC  -g -O2 -c clusteringCoef.cpp -o clusteringCoef.o
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/i386  -I/usr/local/include   -IboostIncl  -fPIC  -g -O2 -c dominatorTree.cpp -o dominatorTree.o
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/i386  -I/usr/local/include   -IboostIncl  -fPIC  -g -O2 -c hcs.cpp -o hcs.o
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/i386  -I/usr/local/include   -IboostIncl  -fPIC  -g -O2 -c incrConnComp.cpp -o incrConnComp.o
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/i386  -I/usr/local/include   -IboostIncl  -fPIC  -g -O2 -c interfaces.cpp -o interfaces.o
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/i386  -I/usr/local/include   -IboostIncl  -fPIC  -g -O2 -c layout.cpp -o layout.o
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/i386  -I/usr/local/include   -IboostIncl  -fPIC  -g -O2 -c minST.cpp -o minST.o
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/i386  -I/usr/local/include   -IboostIncl  -fPIC  -g -O2 -c mincut.cpp -o mincut.o
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/i386  -I/usr/local/include   -IboostIncl  -fPIC  -g -O2 -c ordering.cpp -o ordering.o
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/i386  -I/usr/local/include   -IboostIncl  -fPIC  -g -O2 -c shortestPath.cpp -o shortestPath.o
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/i386  -I/usr/local/include   -IboostIncl  -fPIC  -g -O2 -c sna.cpp -o sna.o
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/i386  -I/usr/local/include   -IboostIncl  -fPIC  -g -O2 -c transitive_closure.cpp -o transitive_closure.o
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/i386  -I/usr/local/include   -IboostIncl  -fPIC  -g -O2 -c wavefront.cpp -o wavefront.o
g++ -arch i386 -dynamiclib -Wl,-headerpad_max_install_names -mmacosx-version-min=10.4 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o RBGL.so bbc.o cliques.o clusteringCoef.o dominatorTree.o hcs.o incrConnComp.o interfaces.o layout.o minST.o mincut.o ordering.o shortestPath.o sna.o transitive_closure.o wavefront.o   -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** R
** data
** inst
** preparing package for lazy loading
Loading required package: graph
** help
 >>> Building/Updating help pages for package 'RBGL'
     Formats: text html latex example 
  FileDep                           text    html    latex   example
  RBGL.overview                     text    html    latex
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  astarSearch                       text    html    latex   example
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  bandwidth                         text    html    latex   example
  bccluster                         text    html    latex   example
  bellman.ford.sp                   text    html    latex   example
  betweenness                       text    html    latex   example
  bfs                               text    html    latex   example
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  biConnComp                        text    html    latex   example
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  boyerMyrvoldPlanarityTest         text    html    latex
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  chrobakPayneStraightLineDrawing   text    html    latex
  clusteringCoef                    text    html    latex   example
  clusteringCoefAppr                text    html    latex   example
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  coloring                          text    html    latex   example
  connectedComp                     text    html    latex   example
  dag.sp                            text    html    latex   example
  dijkstra.sp                       text    html    latex   example
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  dominatorTree                     text    html    latex   example
  edgeConn                          text    html    latex   example
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  edmondsMaxCardinalityMatching     text    html    latex
  extractPath                       text    html    latex   example
  floyd.warshall.all.pairs.sp       text    html    latex   example
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  gprofile                          text    html    latex   example
  graphGenerator                    text    html    latex   example
  highlyConnSG                      text    html    latex   example
  incrConnComp                      text    html    latex   example
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  is.triangulated                   text    html    latex   example
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  isKuratowskiSubgraph              text    html    latex
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  johnson.all.pairs.sp              text    html    latex   example
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  kCliques                          text    html    latex   example
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  kolmogorovMaxFlow                 text    html    latex
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  lambdaSets                        text    html    latex   example
  layout                            text    html    latex   example
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  makeBiconnectedPlanar             text    html    latex
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  maxClique                         text    html    latex   example
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  maximumCycleRatio                 text    html    latex
  minCut                            text    html    latex   example
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  minimumCycleRatio                 text    html    latex
  mstree.kruskal                    text    html    latex   example
  mstree.prim                       text    html    latex   example
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  ordering                          text    html    latex   example
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  planarCanonicalOrdering           text    html    latex
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  transClosure                      text    html    latex   example
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  tsort                             text    html    latex   example
  wavefront                         text    html    latex   example
** building package indices ...
* DONE (RBGL)

                INSTALLATION OF ppc LIBS WITH 'R_ARCH=/ppc R CMD INSTALL --library=RBGL.buildbin-libdir --libs-only RBGL_1.18.0.tar.gz'

* Installing *source* package 'RBGL' ...
untarring boost include tree...
** libs
** arch - ppc
g++ -arch ppc -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/ppc  -I/usr/local/include   -IboostIncl  -fPIC  -g -O2 -c bbc.cpp -o bbc.o
g++ -arch ppc -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/ppc  -I/usr/local/include   -IboostIncl  -fPIC  -g -O2 -c cliques.cpp -o cliques.o
g++ -arch ppc -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/ppc  -I/usr/local/include   -IboostIncl  -fPIC  -g -O2 -c clusteringCoef.cpp -o clusteringCoef.o
g++ -arch ppc -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/ppc  -I/usr/local/include   -IboostIncl  -fPIC  -g -O2 -c dominatorTree.cpp -o dominatorTree.o
g++ -arch ppc -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/ppc  -I/usr/local/include   -IboostIncl  -fPIC  -g -O2 -c hcs.cpp -o hcs.o
g++ -arch ppc -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/ppc  -I/usr/local/include   -IboostIncl  -fPIC  -g -O2 -c incrConnComp.cpp -o incrConnComp.o
g++ -arch ppc -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/ppc  -I/usr/local/include   -IboostIncl  -fPIC  -g -O2 -c interfaces.cpp -o interfaces.o
g++ -arch ppc -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/ppc  -I/usr/local/include   -IboostIncl  -fPIC  -g -O2 -c layout.cpp -o layout.o
g++ -arch ppc -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/ppc  -I/usr/local/include   -IboostIncl  -fPIC  -g -O2 -c minST.cpp -o minST.o
g++ -arch ppc -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/ppc  -I/usr/local/include   -IboostIncl  -fPIC  -g -O2 -c mincut.cpp -o mincut.o
g++ -arch ppc -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/ppc  -I/usr/local/include   -IboostIncl  -fPIC  -g -O2 -c ordering.cpp -o ordering.o
g++ -arch ppc -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/ppc  -I/usr/local/include   -IboostIncl  -fPIC  -g -O2 -c shortestPath.cpp -o shortestPath.o
g++ -arch ppc -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/ppc  -I/usr/local/include   -IboostIncl  -fPIC  -g -O2 -c sna.cpp -o sna.o
g++ -arch ppc -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/ppc  -I/usr/local/include   -IboostIncl  -fPIC  -g -O2 -c transitive_closure.cpp -o transitive_closure.o
g++ -arch ppc -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/ppc  -I/usr/local/include   -IboostIncl  -fPIC  -g -O2 -c wavefront.cpp -o wavefront.o
g++ -arch ppc -dynamiclib -Wl,-headerpad_max_install_names -mmacosx-version-min=10.4 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o RBGL.so bbc.o cliques.o clusteringCoef.o dominatorTree.o hcs.o incrConnComp.o interfaces.o layout.o minST.o mincut.o ordering.o shortestPath.o sna.o transitive_closure.o wavefront.o   -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
* DONE (RBGL)