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Package 204/294HostnameOS / ArchBUILDCHECKBUILD BIN
PCpheno 1.4.1
Nolwenn Le Meur
Bioconductor Changelog
Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/PCpheno
Last Changed Rev: 35381 / Revision: 38965
Last Changed Date: 2008-11-17 12:23:39 -0800 (Mon, 17 Nov 2008)
wilson2 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386 [ OK ] OK  OK 
pelham Mac OS X Leopard (10.5.6) / i386  OK  OK  OK 
Package: PCpheno
Version: 1.4.1
Command: /Library/Frameworks/R.framework/Versions/2.8/Resources/bin/R CMD build PCpheno
StartedAt: 2009-04-18 15:19:20 -0700 (Sat, 18 Apr 2009)
EndedAt: 2009-04-18 15:21:20 -0700 (Sat, 18 Apr 2009)
EllapsedTime: 119.9 seconds
RetCode: 0
Status: OK
PackageFile: PCpheno_1.4.1.tar.gz
PackageFileSize: 1.466 MiB

Command output

* checking for file 'PCpheno/DESCRIPTION' ... OK
* preparing 'PCpheno':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* Installing *source* package 'PCpheno' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: ScISI
Loading required package: apComplex
Loading required package: graph
Loading required package: RBGL
Loading required package: Rgraphviz
Loading required package: grid
Loading required package: org.Sc.sgd.db
Loading required package: AnnotationDbi
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: DBI
Loading required package: GO.db
Loading required package: GOstats
Loading required package: annotate
Loading required package: xtable

Attaching package: 'annotate'


	The following object(s) are masked from package:Rgraphviz :

	 toFile 

Loading required package: Category
Loading required package: genefilter
Loading required package: survival
Loading required package: splines
Loading required package: RpsiXML
Loading required package: XML

Attaching package: 'XML'


	The following object(s) are masked from package:graph :

	 addNode 

Loading required package: hypergraph

Attaching package: 'hypergraph'


	The following object(s) are masked from package:xtable :

	 label,
	 label<- 


	The following object(s) are masked from package:AnnotationDbi :

	 head,
	 tail 


	The following object(s) are masked from package:Rgraphviz :

	 head,
	 tail 


	The following object(s) are masked from package:utils :

	 head,
	 tail 

Loading required package: SLGI
Loading required package: lattice
Loading required package: ppiStats
Loading required package: ppiData
Loading required package: RColorBrewer
Loading required package: KEGG.db
** help
 >>> Building/Updating help pages for package 'PCpheno'
     Formats: text html latex example 
  CoHyperGParams-class              text    html    latex
  CoHyperGResult-class              text    html    latex   example
  Dudley                            text    html    latex   example
  Giaever                           text    html    latex   example
  HI                                text    html    latex   example
  KEGG2SCISI                        text    html    latex   example
  Kastenmayer                       text    html    latex   example
  Lesage                            text    html    latex   example
  Osterberg                         text    html    latex   example
  PCpheno.package                   text    html    latex
  SGDphenoL                         text    html    latex   example
  YEASTOHNOLOG                      text    html    latex   example
  buildFDMat                        text    html    latex   example
  categoryToEntrezBuilder           text    html    latex   example
  complexStatus                     text    html    latex   example
  deResult-class                    text    html    latex   example
  densityEstimate                   text    html    latex   example
  getDescr                          text    html    latex   example
  getFDgene                         text    html    latex   example
  graphTheory                       text    html    latex   example
  gtResult-class                    text    html    latex   example
  overlap                           text    html    latex   example
  plot                              text    html    latex   example
  ppiInteraction                    text    html    latex   example
  reduceM                           text    html    latex   example
  testResult-class                  text    html    latex
  truncName                         text    html    latex   example
** building package indices ...
* DONE (PCpheno)
* creating vignettes ... OK
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'PCpheno_1.4.1.tar.gz'