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Package 151/294HostnameOS / ArchBUILDCHECKBUILD BIN
LMGene 1.12.0
John Tillinghast
Bioconductor Changelog
Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/LMGene
Last Changed Rev: 34811 / Revision: 38965
Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008)
wilson2 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.6) / i386  OK [ OK ] OK 
Package: LMGene
Version: 1.12.0
Command: /Library/Frameworks/R.framework/Versions/2.8/Resources/bin/R CMD check --no-vignettes LMGene_1.12.0.tar.gz
StartedAt: 2009-04-18 17:42:12 -0700 (Sat, 18 Apr 2009)
EndedAt: 2009-04-18 17:43:53 -0700 (Sat, 18 Apr 2009)
EllapsedTime: 100.4 seconds
RetCode: 0
Status: OK
CheckDir: LMGene.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.3-bioc/meat/LMGene.Rcheck'
* using R version 2.8.1 Patched (2009-03-18 r48200)
* using session charset: ASCII
* checking for file 'LMGene/DESCRIPTION' ... OK
* this is package 'LMGene' version '1.12.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'LMGene' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating LMGene-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating LMGene-manual.tex ... OK
* checking LMGene-manual.tex using pdflatex ... OK

LMGene.Rcheck/00install.out:

* Installing *source* package 'LMGene' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: multtest
Loading required package: survival
Loading required package: splines
** help
 >>> Building/Updating help pages for package 'LMGene'
     Formats: text html latex example 
Note: removing empty section \details in file 'GetLMObj.Rd'
Note: removing empty section \note in file 'GetLMObj.Rd'
Note: removing empty section \references in file 'GetLMObj.Rd'
Note: removing empty section \seealso in file 'GetLMObj.Rd'
  GetLMObj                          text    html    latex   example
  LMGene                            text    html    latex   example
  genediff                          text    html    latex   example
  glog                              text    html    latex   example
  jggrad2                           text    html    latex   example
  jglog                             text    html    latex   example
  lnorm                             text    html    latex   example
Note: removing empty section \details in file 'lnormeS.Rd'
Note: removing empty section \note in file 'lnormeS.Rd'
  lnormeS                           text    html    latex   example
Note: removing empty section \seealso in file 'mlm2lm.Rd'
  mlm2lm                            text    html    latex   example
Note: removing empty section \seealso in file 'msa.Rd'
  msa                               text    html    latex   example
  msecalc                           text    html    latex   example
  msecalcmult                       text    html    latex   example
  neweS                             text    html    latex   example
  norm                              text    html    latex   example
Note: removing empty section \note in file 'psmeans.Rd'
Note: removing empty section \references in file 'psmeans.Rd'
Note: removing empty section \seealso in file 'psmeans.Rd'
  psmeans                           text    html    latex   example
  pvadjust                          text    html    latex   example
  rowaov                            text    html    latex   example
  rowlist                           text    html    latex   example
  sample.eS                         text    html    latex   example
Note: removing empty section \details in file 'sample.ind.Rd'
  sample.ind                        text    html    latex   example
  sample.mat                        text    html    latex   example
  tranest                           text    html    latex   example
  tranest2                          text    html    latex   example
  tranestmult                       text    html    latex   example
Note: removing empty section \details in file 'transeS.Rd'
Note: removing empty section \note in file 'transeS.Rd'
Note: removing empty section \references in file 'transeS.Rd'
Note: removing empty section \seealso in file 'transeS.Rd'
  transeS                           text    html    latex   example
  vlist                             text    html    latex   example
** building package indices ...
* DONE (LMGene)