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Package 115/294HostnameOS / ArchBUILDCHECKBUILD BIN
GGtools 3.0.0
Vince Carey
Bioconductor Changelog
Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/GGtools
Last Changed Rev: 34811 / Revision: 38965
Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008)
wilson2 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK [ OK ] OK 
pelham Mac OS X Leopard (10.5.6) / i386  OK  OK  OK 
Package: GGtools
Version: 3.0.0
Command: /Library/Frameworks/R.framework/Versions/2.8/Resources/bin/R CMD check --no-vignettes GGtools_3.0.0.tar.gz
StartedAt: 2009-04-18 16:59:21 -0700 (Sat, 18 Apr 2009)
EndedAt: 2009-04-18 17:05:26 -0700 (Sat, 18 Apr 2009)
EllapsedTime: 365.0 seconds
RetCode: 0
Status: OK
CheckDir: GGtools.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.3-bioc/meat/GGtools.Rcheck'
* using R version 2.8.1 (2008-12-22)
* using session charset: ASCII
* checking for file 'GGtools/DESCRIPTION' ... OK
* this is package 'GGtools' version '3.0.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'GGtools' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... NOTE
  
  Welcome to Bioconductor
  
    Vignettes contain introductory material. To view, type
    'openVignette()'. To cite Bioconductor, see
    'citation("Biobase")' and for packages 'citation(pkgname)'.
  
Portable packages use only ASCII characters in their datasets.
* creating GGtools-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating GGtools-manual.tex ... OK
* checking GGtools-manual.tex using pdflatex ... OK

GGtools.Rcheck/00install.out:

* Installing *source* package 'GGtools' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: GGBase
Loading required package: GSEABase
Loading required package: AnnotationDbi
Loading required package: annotate
Loading required package: xtable
Loading required package: graph
Loading required package: snpMatrix
Loading required package: survival
Loading required package: splines
Loading required package: RSQLite
Loading required package: DBI
Loading required package: geneplotter
Loading required package: lattice
KernSmooth 2.22 installed
Copyright M. P. Wand 1997

Attaching package: 'geneplotter'


	The following object(s) are masked from package:lattice :

	 panel.smoothScatter 

Loading required package: RColorBrewer
Loading required package: Biostrings
Loading required package: IRanges

Attaching package: 'IRanges'


	The following object(s) are masked from package:Biobase :

	 annotation 


	The following object(s) are masked from package:base :

	 cbind,
	 rbind,
	 sapply 


Attaching package: 'Biostrings'


	The following object(s) are masked from package:graph :

	 complement 


	The following object(s) are masked from package:base :

	 chartr,
	 order,
	 substr,
	 substring 

Loading required package: rtracklayer
Loading required package: RCurl
Loading required package: rpart
** help
 >>> Building/Updating help pages for package 'GGtools'
     Formats: text html latex example 
  gwSnpTests                        text    html    latex   example
  hbTestResults-class               text    html    latex   example
  hbTests-methods                   text    html    latex   example
  hmceuB36.2021                     text    html    latex   example
  invokePhase-methods               text    html    latex   example
  plot-methods                      text    html    latex
  snpm2mapLD                        text    html    latex   example
Note: unmatched right brace in file 'snpm2phase.Rd' on or after line 12
  snpm2phase                        text    html    latex   example
  strMultPop                        text    html    latex   example
  topSnps-methods                   text    html    latex
  trackSet-methods                  text    html    latex
** building package indices ...
Loading required package: methods
* DONE (GGtools)