GEOquery 2.6.0
Sean Davis
| Bioconductor Changelog | | Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/GEOquery | | Last Changed Rev: 34811 / Revision: 38965 | | Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008) |
| wilson2 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | [ OK ] | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.6) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.3-bioc/meat/GEOquery.Rcheck'
* using R version 2.8.1 (2008-12-22)
* using session charset: ISO8859-1
* checking for file 'GEOquery/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'GEOquery' version '2.6.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'GEOquery' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating GEOquery-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating GEOquery-manual.tex ... OK
* checking GEOquery-manual.tex using pdflatex ... OK
installing R.css in E:/biocbld/bbs-2.3-bioc/meat/GEOquery.Rcheck
---------- Making package GEOquery ------------
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
installing R files
installing inst files
preparing package GEOquery for lazy loading
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: RCurl
installing man source files
installing indices
installing help
>>> Building/Updating help pages for package 'GEOquery'
Formats: text html latex example chm
GDS-class text html latex chm
GDS2MA text html latex example chm
GEOData-class text html latex chm
GEODataTable-class text html latex chm
GPL-class text html latex chm
GSE-class text html latex chm
GSM-class text html latex chm
Note: removing empty section \usage in file 'dataTable.Rd'
Note: removing empty section \details in file 'dataTable.Rd'
Note: removing empty section \arguments in file 'dataTable.Rd'
Note: removing empty section \usage in file 'dataTable.Rd'
Note: removing empty section \details in file 'dataTable.Rd'
Note: removing empty section \arguments in file 'dataTable.Rd'
dataTable text html latex chm
getGEO text html latex example chm
getGEOSuppFiles text html latex example chm
getGEOfile text html latex example chm
gunzip text html latex chm
parseGEO text html latex chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\bbs-2.3-bioc\meat\GEOquery.Rcheck\00_pkg_src\GEOquery\chm\GEOquery.chm
Compile time: 0 minutes, 0 seconds
14 Topics
65 Local links
1 Internet link
1 Graphic
Created e:\biocbld\bbs-2.3-bioc\meat\GEOquery.Rcheck\00_pkg_src\GEOquery\chm\GEOquery.chm, 32,315 bytes
Compression decreased file by 15,881 bytes.
adding MD5 sums
* DONE (GEOquery)