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Package 75/294HostnameOS / ArchBUILDCHECKBUILD BIN
DNAcopy 1.16.0
Venkatraman E. Seshan
Bioconductor Changelog
Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/DNAcopy
Last Changed Rev: 34811 / Revision: 38965
Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008)
wilson2 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.6) / i386 [ OK ] OK  OK 
Package: DNAcopy
Version: 1.16.0
Command: /Library/Frameworks/R.framework/Versions/2.8/Resources/bin/R CMD build DNAcopy
StartedAt: 2009-04-18 15:06:40 -0700 (Sat, 18 Apr 2009)
EndedAt: 2009-04-18 15:07:04 -0700 (Sat, 18 Apr 2009)
EllapsedTime: 24.1 seconds
RetCode: 0
Status: OK
PackageFile: DNAcopy_1.16.0.tar.gz
PackageFileSize: 245.3 KiB

Command output

* checking for file 'DNAcopy/DESCRIPTION' ... OK
* preparing 'DNAcopy':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
* Installing *source* package 'DNAcopy' ...
** libs
** arch - i386
gfortran-4.2 -arch i386   -fPIC  -g -O2 -Wall -c cbststats.f -o cbststats.o
gfortran-4.2 -arch i386   -fPIC  -g -O2 -Wall -c changepoints.f -o changepoints.o
gfortran-4.2 -arch i386   -fPIC  -g -O2 -Wall -c esegment.f -o esegment.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -Wall -c flchoose.c -o flchoose.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -Wall -c fphyper.c -o fphyper.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -Wall -c fpnorm.c -o fpnorm.o
gfortran-4.2 -arch i386   -fPIC  -g -O2 -Wall -c getbdry.f -o getbdry.o
gfortran-4.2 -arch i386   -fPIC  -g -O2 -Wall -c prune.f -o prune.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -Wall -c rshared.c -o rshared.o
gfortran-4.2 -arch i386   -fPIC  -g -O2 -Wall -c segmentp.f -o segmentp.o
gfortran-4.2 -arch i386   -fPIC  -g -O2 -Wall -c tailprobs.f -o tailprobs.o
gcc-4.2 -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names  -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o DNAcopy.so cbststats.o changepoints.o esegment.o flchoose.o fphyper.o fpnorm.o getbdry.o prune.o rshared.o segmentp.o tailprobs.o  -lgfortran -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** arch - ppc
gfortran-4.2 -arch ppc   -fPIC  -g -O2 -Wall -c cbststats.f -o cbststats.o
gfortran-4.2 -arch ppc   -fPIC  -g -O2 -Wall -c changepoints.f -o changepoints.o
gfortran-4.2 -arch ppc   -fPIC  -g -O2 -Wall -c esegment.f -o esegment.o
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -Wall -c flchoose.c -o flchoose.o
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -Wall -c fphyper.c -o fphyper.o
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -Wall -c fpnorm.c -o fpnorm.o
gfortran-4.2 -arch ppc   -fPIC  -g -O2 -Wall -c getbdry.f -o getbdry.o
gfortran-4.2 -arch ppc   -fPIC  -g -O2 -Wall -c prune.f -o prune.o
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -Wall -c rshared.c -o rshared.o
gfortran-4.2 -arch ppc   -fPIC  -g -O2 -Wall -c segmentp.f -o segmentp.o
gfortran-4.2 -arch ppc   -fPIC  -g -O2 -Wall -c tailprobs.f -o tailprobs.o
gcc-4.2 -arch ppc -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names  -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o DNAcopy.so cbststats.o changepoints.o esegment.o flchoose.o fphyper.o fpnorm.o getbdry.o prune.o rshared.o segmentp.o tailprobs.o  -lgfortran -lSystemStubs -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** arch - ppc64
gfortran-4.2 -arch ppc64   -fPIC  -g -O2 -Wall -c cbststats.f -o cbststats.o
gfortran-4.2 -arch ppc64   -fPIC  -g -O2 -Wall -c changepoints.f -o changepoints.o
gfortran-4.2 -arch ppc64   -fPIC  -g -O2 -Wall -c esegment.f -o esegment.o
gcc-4.2 -arch ppc64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/ppc64  -I/usr/local/include    -fPIC  -g -O2 -Wall -c flchoose.c -o flchoose.o
gcc-4.2 -arch ppc64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/ppc64  -I/usr/local/include    -fPIC  -g -O2 -Wall -c fphyper.c -o fphyper.o
gcc-4.2 -arch ppc64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/ppc64  -I/usr/local/include    -fPIC  -g -O2 -Wall -c fpnorm.c -o fpnorm.o
gfortran-4.2 -arch ppc64   -fPIC  -g -O2 -Wall -c getbdry.f -o getbdry.o
gfortran-4.2 -arch ppc64   -fPIC  -g -O2 -Wall -c prune.f -o prune.o
gcc-4.2 -arch ppc64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/ppc64  -I/usr/local/include    -fPIC  -g -O2 -Wall -c rshared.c -o rshared.o
gfortran-4.2 -arch ppc64   -fPIC  -g -O2 -Wall -c segmentp.f -o segmentp.o
gfortran-4.2 -arch ppc64   -fPIC  -g -O2 -Wall -c tailprobs.f -o tailprobs.o
gcc-4.2 -arch ppc64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names  -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o DNAcopy.so cbststats.o changepoints.o esegment.o flchoose.o fphyper.o fpnorm.o getbdry.o prune.o rshared.o segmentp.o tailprobs.o  -lgfortran -lSystemStubs -L/Library/Frameworks/R.framework/Versions/2.8/Resources/lib/ppc64 -lR -dylib_file libRblas.dylib:/Library/Frameworks/R.framework/Versions/2.8/Resources/lib/ppc64/libRblas.dylib -Wl,-framework -Wl,CoreFoundation
** arch - x86_64
gfortran-4.2 -arch x86_64   -fPIC  -g -O2 -Wall -c cbststats.f -o cbststats.o
gfortran-4.2 -arch x86_64   -fPIC  -g -O2 -Wall -c changepoints.f -o changepoints.o
gfortran-4.2 -arch x86_64   -fPIC  -g -O2 -Wall -c esegment.f -o esegment.o
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/x86_64  -I/usr/local/include    -fPIC  -g -O2 -Wall -c flchoose.c -o flchoose.o
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/x86_64  -I/usr/local/include    -fPIC  -g -O2 -Wall -c fphyper.c -o fphyper.o
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/x86_64  -I/usr/local/include    -fPIC  -g -O2 -Wall -c fpnorm.c -o fpnorm.o
gfortran-4.2 -arch x86_64   -fPIC  -g -O2 -Wall -c getbdry.f -o getbdry.o
gfortran-4.2 -arch x86_64   -fPIC  -g -O2 -Wall -c prune.f -o prune.o
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/x86_64  -I/usr/local/include    -fPIC  -g -O2 -Wall -c rshared.c -o rshared.o
gfortran-4.2 -arch x86_64   -fPIC  -g -O2 -Wall -c segmentp.f -o segmentp.o
gfortran-4.2 -arch x86_64   -fPIC  -g -O2 -Wall -c tailprobs.f -o tailprobs.o
gcc-4.2 -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names  -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o DNAcopy.so cbststats.o changepoints.o esegment.o flchoose.o fphyper.o fpnorm.o getbdry.o prune.o rshared.o segmentp.o tailprobs.o  -lgfortran -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** R
** data
**  moving datasets to lazyload DB
** demo
** inst
** preparing package for lazy loading
** help
 >>> Building/Updating help pages for package 'DNAcopy'
     Formats: text html latex example 
  CNA                               text    html    latex   example
  DNAcopy-internal                  text    html    latex
  DNAcopy                           text    html    latex
  coriell                           text    html    latex
  cytoBand                          text    html    latex
  exon.segment                      text    html    latex   example
  getbdry                           text    html    latex
  plot.DNAcopy                      text    html    latex   example
  segment                           text    html    latex   example
  segments.p                        text    html    latex   example
  segments.summary                  text    html    latex   example
  smooth.CNA                        text    html    latex   example
  subset.CNA                        text    html    latex   example
  subset.DNAcopy                    text    html    latex
** building package indices ...
* DONE (DNAcopy)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'DNAcopy_1.16.0.tar.gz'