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Package 57/294HostnameOS / ArchBUILDCHECKBUILD BIN
CGHcall 2.0.0
Sjoerd Vosse
Bioconductor Changelog
Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/CGHcall
Last Changed Rev: 34811 / Revision: 38965
Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008)
wilson2 Linux (openSUSE 11.1) / x86_64  OK [ WARNINGS ]
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  WARNINGS  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  WARNINGS  OK 
pelham Mac OS X Leopard (10.5.6) / i386  OK  WARNINGS  OK 
Package: CGHcall
Version: 2.0.0
Command: /home/biocbuild/bbs-2.3-bioc/R/bin/R CMD check --no-vignettes CGHcall_2.0.0.tar.gz
StartedAt: 2009-04-18 15:12:50 -0700 (Sat, 18 Apr 2009)
EndedAt: 2009-04-18 15:13:17 -0700 (Sat, 18 Apr 2009)
EllapsedTime: 26.9 seconds
RetCode: 0
Status: WARNINGS
CheckDir: CGHcall.Rcheck
Warnings: 1

Command output

* checking for working pdflatex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.3-bioc/meat/CGHcall.Rcheck'
* using R version 2.8.1 (2008-12-22)
* using session charset: UTF-8
* checking for file 'CGHcall/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'CGHcall' version '2.0.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'CGHcall' can be installed ... WARNING
Found the following significant warnings:
  WARNING: \code inside code block in file 'normalize.Rd'
See '/loc/home/biocbuild/bbs-2.3-bioc/meat/CGHcall.Rcheck/00install.out' for details.
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating CGHcall-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating CGHcall-manual.tex ... OK
* checking CGHcall-manual.tex using pdflatex ... OK

WARNING: There was 1 warning, see
  /loc/home/biocbuild/bbs-2.3-bioc/meat/CGHcall.Rcheck/00check.log
for details

CGHcall.Rcheck/00install.out:

* Installing *source* package 'CGHcall' ...
** R
** inst
** preparing package for lazy loading
Loading required package: CGHbase
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: marray
Loading required package: limma
Loading required package: impute
Loading required package: DNAcopy
** help
 >>> Building/Updating help pages for package 'CGHcall'
     Formats: text html latex example 
  CGHcall-package                   text    html    latex
  CGHcall                           text    html    latex   example
WARNING: \code inside code block in file 'normalize.Rd'
  normalize                         text    html    latex   example
  preprocess                        text    html    latex   example
  segmentData                       text    html    latex   example
** building package indices ...
* DONE (CGHcall)