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Package 56/294HostnameOS / ArchBUILDCHECKBUILD BIN
CGHbase 1.0.0
Sjoerd Vosse
Bioconductor Changelog
Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/CGHbase
Last Changed Rev: 34811 / Revision: 38965
Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008)
wilson2 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.6) / i386  OK  OK  OK 
Package: CGHbase
Version: 1.0.0
Command: E:\biocbld\bbs-2.3-bioc\R\bin\R.exe CMD check --no-vignettes CGHbase_1.0.0.tar.gz
StartedAt: 2009-04-18 18:32:04 -0700 (Sat, 18 Apr 2009)
EndedAt: 2009-04-18 18:34:12 -0700 (Sat, 18 Apr 2009)
EllapsedTime: 128.1 seconds
RetCode: 0
Status: OK
CheckDir: CGHbase.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.3-bioc/meat/CGHbase.Rcheck'
* using R version 2.8.1 (2008-12-22)
* using session charset: ISO8859-1
* checking for file 'CGHbase/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'CGHbase' version '1.0.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'CGHbase' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating CGHbase-Ex.R ... OK
* checking examples ... OK
* creating CGHbase-manual.tex ... OK
* checking CGHbase-manual.tex using pdflatex ... OK

CGHbase.Rcheck/00install.out:

installing R.css in E:/biocbld/bbs-2.3-bioc/meat/CGHbase.Rcheck


---------- Making package CGHbase ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  installing R files
  installing data files
  preparing package CGHbase for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: marray
Loading required package: limma
  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'CGHbase'
     Formats: text html latex example chm 
  CGHbase-package                   text    html    latex           chm
  WiltingCalled                     text    html    latex           chm
  WiltingData                       text    html    latex           chm
  WiltingNorm                       text    html    latex           chm
  WiltingRaw                        text    html    latex           chm
  WiltingRegions                    text    html    latex           chm
  WiltingSeg                        text    html    latex           chm
  avedist                           text    html    latex           chm
  chromosomes                       text    html    latex           chm
  class.cghCall                     text    html    latex   example chm
  class.cghRaw                      text    html    latex   example chm
  class.cghRegions                  text    html    latex   example chm
  class.cghSeg                      text    html    latex   example chm
  copynumber                        text    html    latex   example chm
  frequencyPlot                     text    html    latex   example chm
  plot                              text    html    latex           chm
  probloss                          text    html    latex           chm
  regions                           text    html    latex           chm
  summaryPlot                       text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling e:\biocbld\bbs-2.3-bioc\meat\CGHbase.Rcheck\00_pkg_src\CGHbase\chm\CGHbase.chm


Compile time: 0 minutes, 11 seconds
20	Topics
151	Local links
0	Internet links
1	Graphic


Created e:\biocbld\bbs-2.3-bioc\meat\CGHbase.Rcheck\00_pkg_src\CGHbase\chm\CGHbase.chm, 35,918 bytes
Compression decreased file by 60,133 bytes.
  adding MD5 sums

* DONE (CGHbase)