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Package 39/294HostnameOS / ArchBUILDCHECKBUILD BIN
BicARE 1.0.0
Pierre Gestraud ,
Bioconductor Changelog
Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/BicARE
Last Changed Rev: 34811 / Revision: 38965
Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008)
wilson2 Linux (openSUSE 11.1) / x86_64  OK [ OK ]
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.6) / i386  OK  OK  OK 
Package: BicARE
Version: 1.0.0
Command: /home/biocbuild/bbs-2.3-bioc/R/bin/R CMD check --no-vignettes BicARE_1.0.0.tar.gz
StartedAt: 2009-04-18 15:02:33 -0700 (Sat, 18 Apr 2009)
EndedAt: 2009-04-18 15:04:59 -0700 (Sat, 18 Apr 2009)
EllapsedTime: 145.7 seconds
RetCode: 0
Status: OK
CheckDir: BicARE.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.3-bioc/meat/BicARE.Rcheck'
* using R version 2.8.1 (2008-12-22)
* using session charset: UTF-8
* checking for file 'BicARE/DESCRIPTION' ... OK
* this is package 'BicARE' version '1.0.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'BicARE' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating BicARE-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating BicARE-manual.tex ... OK
* checking BicARE-manual.tex using pdflatex ... OK

BicARE.Rcheck/00install.out:

* Installing *source* package 'BicARE' ...
** libs
gcc -std=gnu99 -I/home/biocbuild/bbs-2.3-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c BicARE.c -o BicARE.o
BicARE.c: In function ‘floc’:
BicARE.c:439: warning: unused variable ‘invk’
BicARE.c: In function ‘action’:
BicARE.c:270: warning: ‘j’ may be used uninitialized in this function
BicARE.c:270: warning: ‘i’ may be used uninitialized in this function
gcc -std=gnu99 -shared -L/usr/local/lib64 -o BicARE.so BicARE.o   -L/home/biocbuild/bbs-2.3-bioc/R/lib -lR
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: multtest
Loading required package: GSEABase
Loading required package: AnnotationDbi
Loading required package: annotate
Loading required package: xtable
Loading required package: graph
** help
 >>> Building/Updating help pages for package 'BicARE'
     Formats: text html latex example 
  BicARE-package                    text    html    latex
  FLOC                              text    html    latex   example
  bicluster                         text    html    latex   example
  makeReport                        text    html    latex   example
  residue                           text    html    latex   example
  sample.bicData                    text    html    latex
  sample.biclustering               text    html    latex
  testAnnot                         text    html    latex   example
  testSet                           text    html    latex   example
** building package indices ...
* DONE (BicARE)