BSgenome 1.10.5
H. Pages
| Bioconductor Changelog | | Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/BSgenome | | Last Changed Rev: 37897 / Revision: 38965 | | Last Changed Date: 2009-03-11 00:00:55 -0700 (Wed, 11 Mar 2009) |
| wilson2 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | [ OK ] | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.6) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.3-bioc/meat/BSgenome.Rcheck'
* using R version 2.8.1 (2008-12-22)
* using session charset: ISO8859-1
* checking for file 'BSgenome/DESCRIPTION' ... OK
* this is package 'BSgenome' version '1.10.5'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'BSgenome' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating BSgenome-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating BSgenome-manual.tex ... OK
* checking BSgenome-manual.tex using pdflatex ... OK
installing R.css in E:/biocbld/bbs-2.3-bioc/meat/BSgenome.Rcheck
---------- Making package BSgenome ------------
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
installing R files
installing inst files
preparing package BSgenome for lazy loading
Loading required package: IRanges
Attaching package: 'IRanges'
The following object(s) are masked from package:base :
cbind,
rbind,
sapply
Loading required package: Biostrings
Attaching package: 'Biostrings'
The following object(s) are masked from package:base :
chartr,
order,
substr,
substring
installing man source files
installing indices
installing help
>>> Building/Updating help pages for package 'BSgenome'
Formats: text html latex example chm
BSParams-class text html latex chm
BSgenome-class text html latex example chm
BSgenomeForge text html latex example chm
available.genomes text html latex example chm
bsapply text html latex example chm
getSeq text html latex example chm
injectSNPs text html latex example chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\bbs-2.3-bioc\meat\BSgenome.Rcheck\00_pkg_src\BSgenome\chm\BSgenome.chm
Compile time: 0 minutes, 0 seconds
8 Topics
84 Local links
0 Internet links
1 Graphic
Created e:\biocbld\bbs-2.3-bioc\meat\BSgenome.Rcheck\00_pkg_src\BSgenome\chm\BSgenome.chm, 34,967 bytes
Compression decreased file by 24,915 bytes.
adding MD5 sums
* DONE (BSgenome)