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Package 37/294HostnameOS / ArchBUILDCHECKBUILD BIN
BGmix 1.2.0
Alex Lewin
Bioconductor Changelog
Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/BGmix
Last Changed Rev: 34811 / Revision: 38965
Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008)
wilson2 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.6) / i386  OK  OK  OK 
Package: BGmix
Version: 1.2.0
Command: E:\biocbld\bbs-2.3-bioc\R\bin\R.exe CMD check --no-vignettes BGmix_1.2.0.tar.gz
StartedAt: 2009-04-18 18:15:46 -0700 (Sat, 18 Apr 2009)
EndedAt: 2009-04-18 18:17:55 -0700 (Sat, 18 Apr 2009)
EllapsedTime: 129.0 seconds
RetCode: 0
Status: OK
CheckDir: BGmix.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.3-bioc/meat/BGmix.Rcheck'
* using R version 2.8.1 (2008-12-22)
* using session charset: ISO8859-1
* checking for file 'BGmix/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'BGmix' version '1.2.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'BGmix' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating BGmix-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating BGmix-manual.tex ... OK
* checking BGmix-manual.tex using pdflatex ... OK

BGmix.Rcheck/00install.out:

installing R.css in E:/biocbld/bbs-2.3-bioc/meat/BGmix.Rcheck


---------- Making package BGmix ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  making DLL ...
making BGmix_main.d from BGmix_main.cpp
making rundir.d from rundir.cpp
making updates_BGmix.d from updates_BGmix.cpp
g++  -I ../boostIncl -Ie:/biocbld/bbs-2.3-bioc/R/include   -DUSING_R  -O2 -Wall  -c BGmix_main.cpp -o BGmix_main.o
g++  -I ../boostIncl -Ie:/biocbld/bbs-2.3-bioc/R/include   -DUSING_R  -O2 -Wall  -c rundir.cpp -o rundir.o
g++  -I ../boostIncl -Ie:/biocbld/bbs-2.3-bioc/R/include   -DUSING_R  -O2 -Wall  -c updates_BGmix.cpp -o updates_BGmix.o
windres --preprocessor="gcc -E -xc -DRC_INVOKED" -I e:/biocbld/bbs-2.3-bioc/R/include  -i BGmix_res.rc -o BGmix_res.o
g++   -shared -s  -o BGmix.dll BGmix.def BGmix_main.o rundir.o updates_BGmix.o BGmix_res.o  -Le:/biocbld/bbs-2.3-bioc/R/bin    -lR
  ... DLL made
  installing DLL
  installing R files
  installing inst files
  installing data files
  preparing package BGmix for lazy loading
Loading required package: KernSmooth
KernSmooth 2.22 installed
Copyright M. P. Wand 1997
  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'BGmix'
     Formats: text html latex example chm 
  BGmix-package                     text    html    latex   example chm
  BGmix                             text    html    latex   example chm
  EstimatePi0                       text    html    latex   example chm
  FDRforTailPP                      text    html    latex   example chm
  FDRplotTailPP                     text    html    latex   example chm
  TailPP                            text    html    latex   example chm
  calcFDR                           text    html    latex   example chm
  ccParams                          text    html    latex   example chm
  ccPred                            text    html    latex   example chm
  ccSummary                         text    html    latex   example chm
  ccTrace                           text    html    latex   example chm
  histTailPP                        text    html    latex   example chm
  plotBasic                         text    html    latex   example chm
  plotCompare                       text    html    latex   example chm
  plotFDR                           text    html    latex   example chm
  plotMixDensity                    text    html    latex   example chm
  plotPredChecks                    text    html    latex   example chm
  plotTrace                         text    html    latex   example chm
  readBGX                           text    html    latex           chm
  ss                                text    html    latex           chm
  ybar                              text    html    latex           chm
Microsoft HTML Help Compiler 4.74.8702

Compiling e:\biocbld\bbs-2.3-bioc\meat\BGmix.Rcheck\00_pkg_src\BGmix\chm\BGmix.chm


Compile time: 0 minutes, 0 seconds
22	Topics
65	Local links
2	Internet links
1	Graphic


Created e:\biocbld\bbs-2.3-bioc\meat\BGmix.Rcheck\00_pkg_src\BGmix\chm\BGmix.chm, 38,508 bytes
Compression decreased file by 33,251 bytes.
  adding MD5 sums

* DONE (BGmix)