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Package 200/260HostnameOS / ArchBUILDCHECKBUILD BIN
reb 1.14.0
Karl J. Dykema
Snapshot Date: 2008-10-16 00:10:09 -0700 (Thu, 16 Oct 2008)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_2/madman/Rpacks/reb
Last Changed Rev: 31430 / Revision: 34573
Last Changed Date: 2008-04-29 16:50:18 -0700 (Tue, 29 Apr 2008)
lamb1 Linux (SUSE 10.1) / x86_64 [ OK ] OK 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
wellington Linux (openSUSE 10.3) / i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
Package: reb
Version: 1.14.0
Command: /home/biocbuild/bbs-2.2-bioc/R/bin/R CMD build reb
StartedAt: 2008-10-16 02:20:52 -0700 (Thu, 16 Oct 2008)
EndedAt: 2008-10-16 02:21:07 -0700 (Thu, 16 Oct 2008)
EllapsedTime: 14.5 seconds
RetCode: 0
Status: OK
PackageFile: reb_1.14.0.tar.gz
PackageFileSize: 592.3 KiB

Command output

* checking for file 'reb/DESCRIPTION' ... OK
* preparing 'reb':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
* Installing *source* package 'reb' ...
** libs
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c movbin.c -o movbin.o
movbin.c: In function 'bcount':
movbin.c:37: warning: suggest parentheses around comparison in operand of &
movbin.c: In function 'bscore':
movbin.c:48: warning: implicit declaration of function 'sqrt'
movbin.c:48: warning: incompatible implicit declaration of built-in function 'sqrt'
movbin.c: In function 'mean':
movbin.c:63: warning: suggest parentheses around comparison in operand of &
movbin.c: In function 'mspan_mov_binom_mx':
movbin.c:128: warning: unused variable 'im_mx'
movbin.c: In function 'mspan_mov_binom':
movbin.c:145: warning: unused variable 'c'
movbin.c:145: warning: unused variable 'r'
movbin.c: In function 'main':
movbin.c:168: warning: unused variable 'nr'
movbin.c:166: warning: unused variable 'rlen'
movbin.c:163: warning: unused variable 'range'
movbin.c:162: warning: unused variable 'sum_mx'
movbin.c:162: warning: unused variable 'sum_vec'
movbin.c:161: warning: unused variable 'im_mx'
movbin.c:161: warning: unused variable 'im_vec'
movbin.c:160: warning: unused variable 'gx2'
movbin.c:158: warning: unused variable 'data'
gcc -std=gnu99 -shared -L/usr/local/lib64 -o reb.so movbin.o   -L/home/biocbuild/bbs-2.2-bioc/R/lib -lR
** R
** data
** inst
** help
Note: removing empty section \value
Note: removing empty section \note
Note: unmatched right brace in file 'regmap.Rd' on or after line 15
Note: removing empty section \value
Note: removing empty section \note
Note: removing empty section \references
Note: removing empty section \note
 >>> Building/Updating help pages for package 'reb'
     Formats: text html latex example 
  Hs.arms                           text    html    latex
  absMax                            text    html    latex   example
  buildChromCytoband                text    html    latex   example
  buildChromMap                     text    html    latex   example
  cset2band                         text    html    latex   example
  fromRevIsh                        text    html    latex   example
  isAbnormal                        text    html    latex   example
  mcr.eset                          text    html    latex   example
  movbin                            text    html    latex   example
  movt                              text    html    latex   example
  naMean                            text    html    latex   example
  regmap                            text    html    latex   example
  revish                            text    html    latex   example
  rmAmbigMappings                   text    html    latex   example
  smoothByRegion                    text    html    latex   example
  summarizeByRegion                 text    html    latex   example
  tBinomTest                        text    html    latex   example
  writeGFF3                         text    html    latex   example
** building package indices ...
* DONE (reb)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'reb_1.14.0.tar.gz'