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Package 77/260HostnameOS / ArchBUILDCHECKBUILD BIN
flowCore 1.6.0
Nolwenn Le Meur
Snapshot Date: 2008-10-16 00:10:09 -0700 (Thu, 16 Oct 2008)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_2/madman/Rpacks/flowCore
Last Changed Rev: 31430 / Revision: 34573
Last Changed Date: 2008-04-29 16:50:18 -0700 (Tue, 29 Apr 2008)
lamb1 Linux (SUSE 10.1) / x86_64  OK  OK 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
wellington Linux (openSUSE 10.3) / i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK [ OK ]
Package: flowCore
Version: 1.6.0
Command: /Users/biocbuild/BBS/utils/build-universal.sh flowCore_1.6.0.tar.gz /Library/Frameworks/R.framework/Versions/2.7/Resources/bin/R flowCore.buildbin-libdir
StartedAt: 2008-10-16 06:58:22 -0700 (Thu, 16 Oct 2008)
EndedAt: 2008-10-16 06:58:45 -0700 (Thu, 16 Oct 2008)
EllapsedTime: 22.9 seconds
RetCode: 0
Status: OK
PackageFile: flowCore_1.6.0.tgz
PackageFileSize: 9.979 MiB

Command output

                INSTALLATION WITH 'R CMD INSTALL flowCore_1.6.0.tar.gz'

* Installing to library 'flowCore.buildbin-libdir'
* Installing *source* package 'flowCore' ...
** libs
** arch - i386
gcc -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -msse3    -fPIC  -g -O2 -march=nocona -c biexponential.c -o biexponential.o
gcc -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -msse3    -fPIC  -g -O2 -march=nocona -c inPolygon.c -o inPolygon.o
gcc -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -mmacosx-version-min=10.4 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o flowCore.so biexponential.o inPolygon.o   -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** arch - ppc
gcc -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -c biexponential.c -o biexponential.o
gcc -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -c inPolygon.c -o inPolygon.o
gcc -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -mmacosx-version-min=10.4 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o flowCore.so biexponential.o inPolygon.o   -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** R
** data
** inst
** preparing package for lazy loading
Loading required package: rrcov
Loading required package: robustbase
Scalable Robust Estimators with High Breakdown Point (version 0.4-07)
Loading required package: feature
Loading required package: KernSmooth
KernSmooth 2.22 installed
Copyright M. P. Wand 1997
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

** help
 >>> Building/Updating help pages for package 'flowCore'
     Formats: text html latex example 
  GvHD                              text    html    latex
  KmeansFilter                      text    html    latex   example
  Subset-methods                    text    html    latex   example
  arcsinhTransform                  text    html    latex   example
  biexponentialTransform            text    html    latex   example
  coerce                            text    html    latex   example
  compensate                        text    html    latex   example
  concreteFilter-class              text    html    latex
  curv1Filter-class                 text    html    latex   example
  curv2Filter-class                 text    html    latex   example
  each_col-methods                  text    html    latex   example
  ellipsoidGate                     text    html    latex   example
  expressionFilter-class            text    html    latex
  filter-and-methods                text    html    latex
  filter-class                      text    html    latex
  filter-in-methods                 text    html    latex
  filter-methods                    text    html    latex   example
  filter-on-methods                 text    html    latex   example
  filterDetails-methods             text    html    latex
  filterReference-class             text    html    latex
  filterResult-class                text    html    latex   example
  filterSet-class                   text    html    latex   example
  flowFrame-class                   text    html    latex   example
  flowSet-class                     text    html    latex   example
  fsApply                           text    html    latex   example
  identifier-methods                text    html    latex   example
  keyword-methods                   text    html    latex   example
  linearTransform                   text    html    latex   example
  lnTransform                       text    html    latex   example
  logTransform                      text    html    latex   example
  logicalFilterResult-class         text    html    latex   example
  logicleTransform                  text    html    latex   example
  manyFilterResult-class            text    html    latex   example
  multipleFilterResult-class        text    html    latex   example
  norm2Filter-class                 text    html    latex   example
  parameterFilter-class             text    html    latex
  parameters-methods                text    html    latex   example
  print.filterSummary               text    html    latex   example
  quadraticTransform                text    html    latex   example
  randomFilterResult-class          text    html    latex
  read.FCS                          text    html    latex   example
  read.FCSheader                    text    html    latex   example
  read.flowSet                      text    html    latex   example
  rectangleGate                     text    html    latex   example
  sampleFilter-class                text    html    latex   example
  sampleFilter                      text    html    latex   example
  scaleTransform                    text    html    latex   example
  setOperationFilter-class          text    html    latex
  spillover-flowSet                 text    html    latex
  split-methods                     text    html    latex   example
  splitScaleTransform               text    html    latex   example
  transform-class                   text    html    latex   example
  transformFilter-class             text    html    latex   example
  transformList-class               text    html    latex   example
  transformMap-class                text    html    latex   example
  truncateTransform                 text    html    latex   example
** building package indices ...
* DONE (flowCore)