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Package 72/260HostnameOS / ArchBUILDCHECKBUILD BIN
externalVector 1.6.0
Biocore Team c/o BioC user list
Snapshot Date: 2008-10-16 00:10:09 -0700 (Thu, 16 Oct 2008)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_2/madman/Rpacks/externalVector
Last Changed Rev: 31430 / Revision: 34573
Last Changed Date: 2008-04-29 16:50:18 -0700 (Tue, 29 Apr 2008)
lamb1 Linux (SUSE 10.1) / x86_64  OK  OK 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
wellington Linux (openSUSE 10.3) / i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
Package: externalVector
Version: 1.6.0
Command: E:\biocbld\bbs-2.2-bioc\R\bin\R.exe CMD check externalVector_1.6.0.tar.gz
StartedAt: 2008-10-16 05:39:54 -0700 (Thu, 16 Oct 2008)
EndedAt: 2008-10-16 05:41:00 -0700 (Thu, 16 Oct 2008)
EllapsedTime: 66.1 seconds
RetCode: 0
Status: OK
CheckDir: externalVector.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.2-bioc/meat/externalVector.Rcheck'
* using R version 2.7.2 (2008-08-25)
* using session charset: ISO8859-1
* checking for file 'externalVector/DESCRIPTION' ... OK
* this is package 'externalVector' version '1.6.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'externalVector' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating externalVector-Ex.R ... OK
* checking examples ... OK
* creating externalVector-manual.tex ... OK
* checking externalVector-manual.tex using pdflatex ... OK

externalVector.Rcheck/00install.out:

installing R.css in E:/biocbld/bbs-2.2-bioc/meat/externalVector.Rcheck


---------- Making package externalVector ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  making DLL ...
making allocator.d from allocator.c
making arraySummary.d from arraySummary.c
making coerce.d from coerce.c
making externalVector.d from externalVector.c
making groups.d from groups.c
making math.d from math.c
making slice.d from slice.c
making storage.d from storage.c
making subscript.d from subscript.c
gcc  -std=gnu99  -Ie:/biocbld/bbs-2.2-bioc/R/include     -O3 -Wall  -c allocator.c -o allocator.o
gcc  -std=gnu99  -Ie:/biocbld/bbs-2.2-bioc/R/include     -O3 -Wall  -c arraySummary.c -o arraySummary.o
gcc  -std=gnu99  -Ie:/biocbld/bbs-2.2-bioc/R/include     -O3 -Wall  -c coerce.c -o coerce.o
coerce.c: In function 'ComplexFromString':
coerce.c:213: warning: initialization from incompatible pointer type
gcc  -std=gnu99  -Ie:/biocbld/bbs-2.2-bioc/R/include     -O3 -Wall  -c externalVector.c -o externalVector.o
externalVector.c:7: warning: 'ScalarVector' defined but not used
gcc  -std=gnu99  -Ie:/biocbld/bbs-2.2-bioc/R/include     -O3 -Wall  -c groups.c -o groups.o
gcc  -std=gnu99  -Ie:/biocbld/bbs-2.2-bioc/R/include     -O3 -Wall  -c math.c -o math.o
gcc  -std=gnu99  -Ie:/biocbld/bbs-2.2-bioc/R/include     -O3 -Wall  -c slice.c -o slice.o
gcc  -std=gnu99  -Ie:/biocbld/bbs-2.2-bioc/R/include     -O3 -Wall  -c storage.c -o storage.o
gcc  -std=gnu99  -Ie:/biocbld/bbs-2.2-bioc/R/include     -O3 -Wall  -c subscript.c -o subscript.o
windres --preprocessor="gcc -E -xc -DRC_INVOKED" -I e:/biocbld/bbs-2.2-bioc/R/include  -i externalVector_res.rc -o externalVector_res.o
gcc  -std=gnu99  -shared -s  -o externalVector.dll externalVector.def allocator.o arraySummary.o coerce.o externalVector.o groups.o math.o slice.o storage.o subscript.o externalVector_res.o  -Le:/biocbld/bbs-2.2-bioc/R/bin    -lR
  ... DLL made
  installing DLL
  installing R files
  preparing package externalVector for lazy loading
Creating a new generic function for "match" in "externalVector"
Creating a new generic function for "as.vector" in "externalVector"
Creating a new generic function for "as.single" in "externalVector"
Creating a new generic function for "as.list" in "externalVector"
Creating a new generic function for "as.matrix" in "externalVector"
Creating a new generic function for "as.data.frame" in "externalVector"
Creating a new generic function for "colSums" in "externalVector"
Creating a new generic function for "colMeans" in "externalVector"
Creating a new generic function for "rowSums" in "externalVector"
Creating a new generic function for "rowMeans" in "externalVector"
Creating a new generic function for "apply" in "externalVector"
Creating a new generic function for "lapply" in "externalVector"
Creating a new generic function for "sapply" in "externalVector"
Creating a new generic function for "mean" in "externalVector"
Creating a new generic function for "median" in "externalVector"
New generic for "var" does not agree with implicit generic from package "stats"; a new generic will be assigned with package "externalVector"
New generic for "cov" does not agree with implicit generic from package "stats"; a new generic will be assigned with package "externalVector"
New generic for "cor" does not agree with implicit generic from package "stats"; a new generic will be assigned with package "externalVector"
Creating a new generic function for "cov2cor" in "externalVector"
  installing man source files
  installing indices
  installing help
 >>> Building/Updating help pages for package 'externalVector'
     Formats: text html latex example chm 
  NAIndex-class                     text    html    latex           chm
  SubscriptList                     text    html    latex   example chm
  Subset                            text    html    latex           chm
  allIndex-class                    text    html    latex           chm
  allNA                             text    html    latex   example chm
  allocators                        text    html    latex           chm
  as.Rvector                        text    html    latex   example chm
  asEach                            text    html    latex   example chm
  defaultElement                    text    html    latex   example chm
  exprMatrix-class                  text    html    latex           chm
  externalAllocator-class           text    html    latex           chm
  externalMatrix                    text    html    latex   example chm
  externalResource-class            text    html    latex           chm
  externalStorage-class             text    html    latex           chm
  externalVector-class              text    html    latex           chm
  externalVector                    text    html    latex   example chm
  externalVectorWithStorage-class   text    html    latex           chm
  gcAllocator-class                 text    html    latex   example chm
  getExternalStorage                text    html    latex           chm
  getNativeStorageMethods           text    html    latex           chm
  indirectExternalMatrix-class      text    html    latex           chm
  indirectExternalVector-class      text    html    latex           chm
  internalType                      text    html    latex           chm
  makeSlice                         text    html    latex   example chm
  matrixIndex-class                 text    html    latex           chm
  nativeStorageMethods-class        text    html    latex           chm
  nativeStorageMethodsList-class    text    html    latex           chm
  nonSlotAttributes                 text    html    latex           chm
  noneIndex-class                   text    html    latex           chm
  positiveIndex-class               text    html    latex           chm
  rebind                            text    html    latex           chm
  setDimNames                       text    html    latex           chm
  setExternalStorageClass           text    html    latex   example chm
  setVirtualMethod                  text    html    latex   example chm
  simpleStorage-class               text    html    latex           chm
  sliceIndex-class                  text    html    latex           chm
  union-class                       text    html    latex           chm
  var                               text    html    latex   example chm
  vectorIndex-class                 text    html    latex           chm
Microsoft HTML Help Compiler 4.74.8702

Compiling e:\biocbld\bbs-2.2-bioc\meat\externalVector.Rcheck\00_pkg_src\externalVector\chm\externalVector.chm


Compile time: 0 minutes, 1 second
40	Topics
504	Local links
0	Internet links
1	Graphic


Created e:\biocbld\bbs-2.2-bioc\meat\externalVector.Rcheck\00_pkg_src\externalVector\chm\externalVector.chm, 83,533 bytes
Compression decreased file by 254,099 bytes.
  adding MD5 sums

* DONE (externalVector)