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Package 51/260HostnameOS / ArchBUILDCHECKBUILD BIN
cghMCR 1.10.0
J. Zhang
Snapshot Date: 2008-10-16 00:10:09 -0700 (Thu, 16 Oct 2008)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_2/madman/Rpacks/cghMCR
Last Changed Rev: 31430 / Revision: 34573
Last Changed Date: 2008-04-29 16:50:18 -0700 (Tue, 29 Apr 2008)
lamb1 Linux (SUSE 10.1) / x86_64  OK [ OK ]
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
wellington Linux (openSUSE 10.3) / i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
Package: cghMCR
Version: 1.10.0
Command: /home/biocbuild/bbs-2.2-bioc/R/bin/R CMD check cghMCR_1.10.0.tar.gz
StartedAt: 2008-10-16 03:54:15 -0700 (Thu, 16 Oct 2008)
EndedAt: 2008-10-16 03:55:02 -0700 (Thu, 16 Oct 2008)
EllapsedTime: 46.5 seconds
RetCode: 0
Status: OK
CheckDir: cghMCR.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory '/home/biocbuild/bbs-2.2-bioc/meat/cghMCR.Rcheck'
* using R version 2.7.2 (2008-08-25)
* using session charset: ISO8859-1
* checking for file 'cghMCR/DESCRIPTION' ... OK
* this is package 'cghMCR' version '1.10.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'cghMCR' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating cghMCR-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating cghMCR-manual.tex ... OK
* checking cghMCR-manual.tex using pdflatex ... OK

cghMCR.Rcheck/00install.out:

* Installing *source* package 'cghMCR' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: DNAcopy
Loading required package: marray
Loading required package: limma
Loading required package: arrayQuality
Loading required package: convert
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: hexbin
Loading required package: grid
Loading required package: lattice
Loading required package: gridBase
Loading required package: RColorBrewer
Warning in namespaceImportFrom(self, asNamespace(ns)) :
  replacing previous import: summary
Creating a new generic function for "print" in "cghMCR"
** help
Note: removing empty section \references
Note: removing empty section \references
 >>> Building/Updating help pages for package 'cghMCR'
     Formats: text html latex example 
  cghMCR-class                      text    html    latex   example
  cghMCR                            text    html    latex   example
  mergeMCRProbes                    text    html    latex   example
  plot.DNAcopy                      text    html    latex   example
** building package indices ...
* DONE (cghMCR)