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Package 234/260HostnameOS / ArchBUILDCHECKBUILD BIN
SNPchip 1.4.0
Robert Scharpf
Snapshot Date: 2008-10-16 00:10:09 -0700 (Thu, 16 Oct 2008)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_2/madman/Rpacks/SNPchip
Last Changed Rev: 31430 / Revision: 34573
Last Changed Date: 2008-04-29 16:50:18 -0700 (Tue, 29 Apr 2008)
lamb1 Linux (SUSE 10.1) / x86_64  OK  OK 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
wellington Linux (openSUSE 10.3) / i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386 [ OK ] OK  OK 
Package: SNPchip
Version: 1.4.0
Command: /Library/Frameworks/R.framework/Versions/2.7/Resources/bin/R CMD build SNPchip
StartedAt: 2008-10-16 03:17:27 -0700 (Thu, 16 Oct 2008)
EndedAt: 2008-10-16 03:18:04 -0700 (Thu, 16 Oct 2008)
EllapsedTime: 37.0 seconds
RetCode: 0
Status: OK
PackageFile: SNPchip_1.4.0.tar.gz
PackageFileSize: 2.22 MiB

Command output

* checking for file 'SNPchip/DESCRIPTION' ... OK
* preparing 'SNPchip':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* Installing *source* package 'SNPchip' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: oligoClasses
Creating a new generic function for "summary" in "SNPchip"
** help
Note: removing empty section \source
Note: removing empty section \details
Note: removing empty section \references
Note: removing empty section \author
Note: removing empty section \details
Note: removing empty section \note
Note: removing empty section \references
Note: removing empty section \examples
Note: removing empty section \seealso
Note: removing empty section \value
Note: removing empty section \details
Note: removing empty section \note
Note: removing empty section \references
Note: removing empty section \examples
 >>> Building/Updating help pages for package 'SNPchip'
     Formats: text html latex example 
  HmmPredict-class                  text    html    latex   example
  ParESet-class                     text    html    latex   example
  ParSnpCallSet-class               text    html    latex   example
  ParSnpCopyNumberSet-class         text    html    latex   example
  ParSnpSet-class                   text    html    latex   example
  RatioSnpSet-class                 text    html    latex   example
  RatioSnpSet-methods               text    html    latex
  addFeatureData-method             text    html    latex
  alleleA                           text    html    latex
  alleleB                           text    html    latex
  centromere                        text    html    latex   example
  chromosome2numeric                text    html    latex
  chromosomeAnnotation              text    html    latex   example
  chromosomeSize                    text    html    latex   example
  coerce-methods                    text    html    latex
  crlmmOut                          text    html    latex   example
  cytoband                          text    html    latex   example
  dbSnpId                           text    html    latex   example
  enzyme                            text    html    latex
  featureData-accessors             text    html    latex
  fragmentLength                    text    html    latex
  getPar                            text    html    latex
  hapmap                            text    html    latex   example
  hmmPredict                        text    html    latex
  plotCytoband                      text    html    latex   example
  plotPredictions                   text    html    latex   example
  plotSnp                           text    html    latex   example
  sample.snpset                     text    html    latex   example
  selectSomeIndex                   text    html    latex
  show-methods                      text    html    latex
  showSummary                       text    html    latex
  smoothSnp                         text    html    latex
  snpPar                            text    html    latex   example
  snpset                            text    html    latex
  summary-methods                   text    html    latex
  updateObject-methods              text    html    latex
** building package indices ...
* DONE (SNPchip)
* creating vignettes ... OK
* removing junk files
* excluding invalid files from 'SNPchip'
Subdirectory 'man' contains invalid file names:
  .calculateYlim.Rd
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'SNPchip_1.4.0.tar.gz'