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Package 207/260HostnameOS / ArchBUILDCHECKBUILD BIN
Rintact 1.2.0
Tony Chiang
Snapshot Date: 2008-10-16 00:10:09 -0700 (Thu, 16 Oct 2008)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_2/madman/Rpacks/Rintact
Last Changed Rev: 31430 / Revision: 34573
Last Changed Date: 2008-04-29 16:50:18 -0700 (Tue, 29 Apr 2008)
lamb1 Linux (SUSE 10.1) / x86_64  OK  OK 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
wellington Linux (openSUSE 10.3) / i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
Package: Rintact
Version: 1.2.0
Command: E:\biocbld\bbs-2.2-bioc\R\bin\R.exe CMD check Rintact_1.2.0.tar.gz
StartedAt: 2008-10-16 07:16:32 -0700 (Thu, 16 Oct 2008)
EndedAt: 2008-10-16 07:17:56 -0700 (Thu, 16 Oct 2008)
EllapsedTime: 83.8 seconds
RetCode: 0
Status: OK
CheckDir: Rintact.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.2-bioc/meat/Rintact.Rcheck'
* using R version 2.7.2 (2008-08-25)
* using session charset: ISO8859-1
* checking for file 'Rintact/DESCRIPTION' ... OK
* this is package 'Rintact' version '1.2.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'Rintact' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
eListHandler : startElement: no visible binding for '<<-' assignment to
  'curEL'
eListHandler : startElement: no visible binding for global variable
  'curEL'
eListHandler : text: no visible binding for global variable 'curEL'
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating Rintact-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating Rintact-manual.tex ... OK
* checking Rintact-manual.tex using pdflatex ... OK

Rintact.Rcheck/00install.out:

installing R.css in E:/biocbld/bbs-2.2-bioc/meat/Rintact.Rcheck


---------- Making package Rintact ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  installing R files
  installing inst files
  preparing package Rintact for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: XML
Loading required package: graph

Attaching package: 'graph'


	The following object(s) are masked from package:XML :

	 addNode 

Loading required package: hypergraph

Attaching package: 'hypergraph'


	The following object(s) are masked from package:utils :

	 head,
	 tail 

Loading required package: RBGL
  installing man source files
  installing indices
  installing help
Note: removing empty section \examples
Note: removing empty section \examples
Note: removing empty section \references
Note: removing empty section \references
Note: removing empty section \examples
Note: removing empty section \examples
 >>> Building/Updating help pages for package 'Rintact'
     Formats: text html latex example chm 
  bait                              text    html    latex   example chm
  complexEntry                      text    html    latex           chm
  complexes                         text    html    latex   example chm
  eListHandler                      text    html    latex   example chm
  intactComplex                     text    html    latex           chm
  intactGraph                       text    html    latex           chm
  intactHyperGraph                  text    html    latex           chm
  intactInteraction                 text    html    latex           chm
  intactXML2Graph                   text    html    latex           chm
  interactionEntry                  text    html    latex           chm
  interactions                      text    html    latex   example chm
  interactors                       text    html    latex   example chm
  list2Matrix                       text    html    latex   example chm
  organismName                      text    html    latex   example chm
  prey                              text    html    latex   example chm
  psi25interaction                  text    html    latex   example chm
  releaseDate                       text    html    latex   example chm
  separateXMLDataByExpt             text    html    latex           chm
  taxId                             text    html    latex   example chm
  translateIntactID                 text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling e:\biocbld\bbs-2.2-bioc\meat\Rintact.Rcheck\00_pkg_src\Rintact\chm\Rintact.chm


Compile time: 0 minutes, 0 seconds
21	Topics
86	Local links
11	Internet links
1	Graphic


Created e:\biocbld\bbs-2.2-bioc\meat\Rintact.Rcheck\00_pkg_src\Rintact\chm\Rintact.chm, 33,094 bytes
Compression decreased file by 32,173 bytes.
  adding MD5 sums

* DONE (Rintact)