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Package 206/260HostnameOS / ArchBUILDCHECKBUILD BIN
Ringo 1.4.0
J. Toedling
Snapshot Date: 2008-10-16 00:10:09 -0700 (Thu, 16 Oct 2008)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_2/madman/Rpacks/Ringo
Last Changed Rev: 31430 / Revision: 34573
Last Changed Date: 2008-04-29 16:50:18 -0700 (Tue, 29 Apr 2008)
lamb1 Linux (SUSE 10.1) / x86_64  OK  OK 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
wellington Linux (openSUSE 10.3) / i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64 [ OK ] OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
Package: Ringo
Version: 1.4.0
Command: E:\biocbld\bbs-2.2-bioc\R\bin\R.exe CMD build Ringo
StartedAt: 2008-10-16 04:12:06 -0700 (Thu, 16 Oct 2008)
EndedAt: 2008-10-16 04:12:47 -0700 (Thu, 16 Oct 2008)
EllapsedTime: 40.9 seconds
RetCode: 0
Status: OK
PackageFile: Ringo_1.4.0.tar.gz
PackageFileSize: 856.2 KiB

Command output

* checking for file 'Ringo/DESCRIPTION' ... OK
* preparing 'Ringo':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
installing R.css in E:/biocbld/bbs-2.2-bioc/tmpdir/Rinst232820822


---------- Making package Ringo ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  making DLL ...
making region_overlap.d from region_overlap.c
making ringo_init.d from ringo_init.c
making mmeansd.d from mmeansd.cpp
making mmedian.d from mmedian.cpp
gcc  -std=gnu99  -Ie:/biocbld/bbs-2.2-bioc/R/include     -O3 -Wall  -c region_overlap.c -o region_overlap.o
gcc  -std=gnu99  -Ie:/biocbld/bbs-2.2-bioc/R/include     -O3 -Wall  -c ringo_init.c -o ringo_init.o
g++   -Ie:/biocbld/bbs-2.2-bioc/R/include     -O2 -Wall  -c mmeansd.cpp -o mmeansd.o
g++   -Ie:/biocbld/bbs-2.2-bioc/R/include     -O2 -Wall  -c mmedian.cpp -o mmedian.o
windres --preprocessor="gcc -E -xc -DRC_INVOKED" -I e:/biocbld/bbs-2.2-bioc/R/include  -i Ringo_res.rc -o Ringo_res.o
g++   -shared -s  -o Ringo.dll Ringo.def region_overlap.o ringo_init.o mmeansd.o mmedian.o Ringo_res.o  -Le:/biocbld/bbs-2.2-bioc/R/bin    -lR
  ... DLL made
  installing DLL
  installing R files
  installing inst files
  preparing package Ringo for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: genefilter
Loading required package: survival
Loading required package: splines
Loading required package: geneplotter
Loading required package: lattice
Loading required package: annotate
Loading required package: AnnotationDbi
Loading required package: DBI
Loading required package: RSQLite
Loading required package: xtable
KernSmooth 2.22 installed
Copyright M. P. Wand 1997
Loading required package: limma
Loading required package: vsn
Loading required package: affy
Loading required package: affyio
Loading required package: preprocessCore
Loading required package: RColorBrewer
Loading required package: SparseM
  installing man source files
  installing indices
  installing help
 >>> Building/Updating help pages for package 'Ringo'
     Formats: text html latex example chm 
  Ringo-internal                    text    html    latex           chm
  arrayImage                        text    html    latex   example chm
  asExprSet                         text    html    latex   example chm
  autocorr                          text    html    latex   example chm
  cherByThreshold                   text    html    latex   example chm
  cherClass                         text    html    latex   example chm
  chipAlongChrom                    text    html    latex   example chm
  computeRunningMedians             text    html    latex   example chm
  compute_gc                        text    html    latex   example chm
  compute_sliding_t                 text    html    latex   example chm
  corrPlot                          text    html    latex   example chm
  features2Probes                   text    html    latex   example chm
  findChersOnSmoothed               text    html    latex   example chm
  ftr2xys                           text    html    latex   example chm
  getFeats                          text    html    latex           chm
  newCER                            text    html    latex   example chm
  nimblegenNorm                     text    html    latex           chm
  plotAutocorr                      text    html    latex   example chm
  plot_cher                         text    html    latex           chm
  posToProbeAnnoEnvironment         text    html    latex   example chm
  preprocess                        text    html    latex   example chm
  probeAnnoClass                    text    html    latex   example chm
  readNimblegen                     text    html    latex   example chm
  regionoverlap                     text    html    latex   example chm
  relateCERs                        text    html    latex   example chm
  sliding_meansd                    text    html    latex   example chm
  sliding_quantile                  text    html    latex   example chm
  upperBoundNull                    text    html    latex   example chm
  validProbeAnno                    text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702



Compiling e:\biocbld\bbs-2.2-bioc\meat\Ringo\chm\Ringo.chm





Compile time: 0 minutes, 1 second

30	Topics

126	Local links

0	Internet links

1	Graphic





Created e:\biocbld\bbs-2.2-bioc\meat\Ringo\chm\Ringo.chm, 64,542 bytes

Compression decreased file by 74,971 bytes.

  adding MD5 sums

* DONE (Ringo)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'Ringo_1.4.0.tar.gz'