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Package 194/260HostnameOS / ArchBUILDCHECKBUILD BIN
RBGL 1.16.0
Li Long
Snapshot Date: 2008-10-16 00:10:09 -0700 (Thu, 16 Oct 2008)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_2/madman/Rpacks/RBGL
Last Changed Rev: 31430 / Revision: 34573
Last Changed Date: 2008-04-29 16:50:18 -0700 (Tue, 29 Apr 2008)
lamb1 Linux (SUSE 10.1) / x86_64  OK  WARNINGS 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  WARNINGS 
wellington Linux (openSUSE 10.3) / i686  OK  WARNINGS 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  WARNINGS  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK [ OK ] OK 
Package: RBGL
Version: 1.16.0
Command: /Library/Frameworks/R.framework/Versions/2.7/Resources/bin/R CMD check RBGL_1.16.0.tar.gz
StartedAt: 2008-10-16 06:03:53 -0700 (Thu, 16 Oct 2008)
EndedAt: 2008-10-16 06:06:11 -0700 (Thu, 16 Oct 2008)
EllapsedTime: 138.2 seconds
RetCode: 0
Status: OK
CheckDir: RBGL.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.2-bioc/meat/RBGL.Rcheck'
* using R version 2.7.2 (2008-08-25)
* using session charset: ASCII
* checking for file 'RBGL/DESCRIPTION' ... OK
* this is package 'RBGL' version '1.16.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'RBGL' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating RBGL-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating RBGL-manual.tex ... OK
* checking RBGL-manual.tex using pdflatex ... OK

RBGL.Rcheck/00install.out:

* Installing *source* package 'RBGL' ...
untarring boost include tree...
** libs
** arch - i386
g++ -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -msse3   -IboostIncl  -fPIC  -g -O2 -march=nocona -c bbc.cpp -o bbc.o
g++ -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -msse3   -IboostIncl  -fPIC  -g -O2 -march=nocona -c cliques.cpp -o cliques.o
g++ -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -msse3   -IboostIncl  -fPIC  -g -O2 -march=nocona -c clusteringCoef.cpp -o clusteringCoef.o
g++ -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -msse3   -IboostIncl  -fPIC  -g -O2 -march=nocona -c dominatorTree.cpp -o dominatorTree.o
g++ -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -msse3   -IboostIncl  -fPIC  -g -O2 -march=nocona -c hcs.cpp -o hcs.o
g++ -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -msse3   -IboostIncl  -fPIC  -g -O2 -march=nocona -c incrConnComp.cpp -o incrConnComp.o
g++ -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -msse3   -IboostIncl  -fPIC  -g -O2 -march=nocona -c interfaces.cpp -o interfaces.o
g++ -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -msse3   -IboostIncl  -fPIC  -g -O2 -march=nocona -c layout.cpp -o layout.o
g++ -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -msse3   -IboostIncl  -fPIC  -g -O2 -march=nocona -c minST.cpp -o minST.o
g++ -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -msse3   -IboostIncl  -fPIC  -g -O2 -march=nocona -c mincut.cpp -o mincut.o
g++ -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -msse3   -IboostIncl  -fPIC  -g -O2 -march=nocona -c ordering.cpp -o ordering.o
g++ -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -msse3   -IboostIncl  -fPIC  -g -O2 -march=nocona -c shortestPath.cpp -o shortestPath.o
g++ -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -msse3   -IboostIncl  -fPIC  -g -O2 -march=nocona -c sna.cpp -o sna.o
g++ -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -msse3   -IboostIncl  -fPIC  -g -O2 -march=nocona -c transitive_closure.cpp -o transitive_closure.o
g++ -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -msse3   -IboostIncl  -fPIC  -g -O2 -march=nocona -c wavefront.cpp -o wavefront.o
g++ -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -dynamiclib -Wl,-headerpad_max_install_names -mmacosx-version-min=10.4 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o RBGL.so bbc.o cliques.o clusteringCoef.o dominatorTree.o hcs.o incrConnComp.o interfaces.o layout.o minST.o mincut.o ordering.o shortestPath.o sna.o transitive_closure.o wavefront.o   -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** R
** data
** inst
** preparing package for lazy loading
Loading required package: graph
** help
Note: removing empty section \value
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 >>> Building/Updating help pages for package 'RBGL'
     Formats: text html latex example 
  FileDep                           text    html    latex   example
  RBGL.overview                     text    html    latex
  astarSearch                       text    html    latex   example
  bandwidth                         text    html    latex   example
  bccluster                         text    html    latex   example
  bellman.ford.sp                   text    html    latex   example
  betweenness                       text    html    latex   example
  bfs                               text    html    latex   example
  biConnComp                        text    html    latex   example
  clusteringCoef                    text    html    latex   example
  clusteringCoefAppr                text    html    latex   example
  coloring                          text    html    latex   example
  connectedComp                     text    html    latex   example
  dag.sp                            text    html    latex   example
  dijkstra.sp                       text    html    latex   example
  dominatorTree                     text    html    latex   example
  edgeConn                          text    html    latex   example
  extractPath                       text    html    latex   example
  floyd.warshall.all.pairs.sp       text    html    latex   example
  gprofile                          text    html    latex   example
  graphGenerator                    text    html    latex   example
  highlyConnSG                      text    html    latex   example
  incrConnComp                      text    html    latex   example
  is.triangulated                   text    html    latex   example
  isomorphism                       text    html    latex   example
  johnson.all.pairs.sp              text    html    latex   example
  kCliques                          text    html    latex   example
  kCores                            text    html    latex   example
  lambdaSets                        text    html    latex   example
  layout                            text    html    latex   example
  maxClique                         text    html    latex   example
  maxFlow                           text    html    latex   example
  minCut                            text    html    latex   example
  mstree.kruskal                    text    html    latex   example
  mstree.prim                       text    html    latex   example
  ordering                          text    html    latex   example
  removeSelfLoops                   text    html    latex   example
  separates                         text    html    latex   example
  sp.between                        text    html    latex   example
  strongComp                        text    html    latex   example
  transClosure                      text    html    latex   example
  transitivity                      text    html    latex   example
  tsort                             text    html    latex   example
  wavefront                         text    html    latex   example
** building package indices ...
* DONE (RBGL)