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Package 95/260HostnameOS / ArchBUILDCHECKBUILD BIN
GeneticsPed 1.2.0
Gregor Gorjanc
Snapshot Date: 2008-10-16 00:10:09 -0700 (Thu, 16 Oct 2008)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_2/madman/Rpacks/GeneticsPed
Last Changed Rev: 31430 / Revision: 34573
Last Changed Date: 2008-04-29 16:50:18 -0700 (Tue, 29 Apr 2008)
lamb1 Linux (SUSE 10.1) / x86_64 [ OK ] OK 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
wellington Linux (openSUSE 10.3) / i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  ERROR  OK 
Package: GeneticsPed
Version: 1.2.0
Command: /home/biocbuild/bbs-2.2-bioc/R/bin/R CMD build GeneticsPed
StartedAt: 2008-10-16 02:38:41 -0700 (Thu, 16 Oct 2008)
EndedAt: 2008-10-16 02:38:53 -0700 (Thu, 16 Oct 2008)
EllapsedTime: 11.5 seconds
RetCode: 0
Status: OK
PackageFile: GeneticsPed_1.2.0.tar.gz
PackageFileSize: 289.6 KiB

Command output

* checking for file 'GeneticsPed/DESCRIPTION' ... OK
* preparing 'GeneticsPed':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
* Installing *source* package 'GeneticsPed' ...
** libs
g++ -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c ainverse.cc -o ainverse.o
g++ -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c eibd.cc -o eibd.o
gfortran   -fpic  -g -O2 -Wall -c ggmatmult.f -o ggmatmult.o
gfortran   -fpic  -g -O2 -Wall -c gpi.f -o gpi.o
g++ -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c inbreed.cc -o inbreed.o
g++ -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c inverseAdditive.cc -o inverseAdditive.o
g++ -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c meuwissen.cc -o meuwissen.o
g++ -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c pedSort.cc -o pedSort.o
g++ -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c pedtemplate.cc -o pedtemplate.o
g++ -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c register.cc -o register.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c sargolzaei.c -o sargolzaei.o
sargolzaei.c: In function 'sargolzaei':
sargolzaei.c:96: warning: comparison between pointer and integer
sargolzaei.c:19: warning: 'MIP' may be used uninitialized in this function
g++ -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c sortped.cc -o sortped.o
g++ -shared -L/usr/local/lib64 -o GeneticsPed.so ainverse.o eibd.o ggmatmult.o gpi.o inbreed.o inverseAdditive.o meuwissen.o pedSort.o pedtemplate.o register.o sargolzaei.o sortped.o  -lgfortran -lm -L/home/biocbuild/bbs-2.2-bioc/R/lib -lR
** R
** data
** inst
** preparing package for lazy loading
Loading required package: gdata
Loading required package: genetics
Loading required package: combinat

Attaching package: 'combinat'


	The following object(s) are masked from package:utils :

	 combn 

Loading required package: gtools
Loading required package: MASS
Loading required package: mvtnorm

NOTE: THIS PACKAGE IS NOW OBSOLETE.

  The R-Genetics project has developed an set of enhanced genetics
  packages to replace 'genetics'. Please visit the project homepage
  at http://rgenetics.org for informtion.


Attaching package: 'genetics'


	The following object(s) are masked from package:base :

	 %in%,
	 as.factor,
	 order 

** help
 >>> Building/Updating help pages for package 'GeneticsPed'
     Formats: text html latex example 
  TDT                               text    html    latex   example
  check                             text    html    latex   example
  datasets                          text    html    latex   example
  extend                            text    html    latex   example
  family                            text    html    latex   example
  founder                           text    html    latex   example
  geneContribution                  text    html    latex   example
  generatePedigree                  text    html    latex   example
  generation                        text    html    latex   example
  gpi                               text    html    latex   example
  gpiUtil                           text    html    latex   example
  inbreeding                        text    html    latex   example
  model.matrix                      text    html    latex   example
  nIndividual                       text    html    latex   example
  pedigree                          text    html    latex   example
  prune                             text    html    latex   example
  relationshipAdditive              text    html    latex   example
  removeIndividual                  text    html    latex   example
  sort.pedigree                     text    html    latex   example
  summary.pedigree                  text    html    latex   example
  undocumented                      text    html    latex
** building package indices ...
* DONE (GeneticsPed)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'GeneticsPed_1.2.0.tar.gz'