stam 1.8.0
Claudio Lottaz
| Snapshot Date: 2008-08-08 00:12:03 -0700 (Fri, 08 Aug 2008) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_2/madman/Rpacks/stam | | Last Changed Rev: 31430 / Revision: 33132 | | Last Changed Date: 2008-04-29 16:50:18 -0700 (Tue, 29 Apr 2008) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | OK | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | OK | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | [ OK ] | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.2-bioc/meat/stam.Rcheck'
* using R version 2.7.1 (2008-06-23)
* using session charset: ISO8859-1
* checking for file 'stam/DESCRIPTION' ... OK
* this is package 'stam' version '1.8.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'stam' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating stam-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating stam-manual.tex ... OK
* checking stam-manual.tex using pdflatex ... OK
installing R.css in E:/biocbld/bbs-2.2-bioc/meat/stam.Rcheck
---------- Making package stam ------------
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
making DLL ...
making util.d from util.c
gcc -std=gnu99 -Ie:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c util.c -o util.o
windres --preprocessor="gcc -E -xc -DRC_INVOKED" -I e:/biocbld/bbs-2.2-bioc/R/include -i stam_res.rc -o stam_res.o
gcc -std=gnu99 -shared -s -o stam.dll stam.def util.o stam_res.o -Le:/biocbld/bbs-2.2-bioc/R/bin -lR
... DLL made
installing DLL
installing R files
installing inst files
installing data files
preparing package stam for lazy loading
Loading required package: GO.db
Loading required package: AnnotationDbi
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: DBI
Loading required package: RSQLite
Loading required package: pamr
Loading required package: cluster
Loading required package: survival
Loading required package: splines
Loading required package: annaffy
Loading required package: KEGG.db
installing man source files
installing indices
Loading required package: methods
Loading required package: utils
Welcome to Structured Analysis of Microarrays
not zipping data
installing help
>>> Building/Updating help pages for package 'stam'
Formats: text html latex example chm
golubTrain.cv text html latex chm
golubTrain.fit text html latex chm
image.stamPrediction text html latex chm
plot.stamCV text html latex chm
plot.stamFit text html latex chm
plot.stamPrediction text html latex chm
stam-internal text html latex chm
stam.cv text html latex example chm
stam.evaluate text html latex example chm
stam.fit text html latex example chm
stam.graph.plot text html latex chm
stam.net text html latex example chm
stam.predict text html latex example chm
stam.rgb.colors text html latex example chm
stam.serve text html latex example chm
stam.writeHTML text html latex example chm
stamCV-class text html latex chm
stamEval-class text html latex chm
stamFit-class text html latex chm
stamINode-class text html latex chm
stamLeaf-class text html latex chm
stamNet-class text html latex chm
stamNode-class text html latex chm
stamPrediction-class text html latex chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\bbs-2.2-bioc\meat\stam.Rcheck\00_pkg_src\stam\chm\stam.chm
Compile time: 0 minutes, 0 seconds
25 Topics
128 Local links
0 Internet links
1 Graphic
Created e:\biocbld\bbs-2.2-bioc\meat\stam.Rcheck\00_pkg_src\stam\chm\stam.chm, 54,645 bytes
Compression decreased file by 70,297 bytes.
adding MD5 sums
* DONE (stam)