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Package 161/260HostnameOS / ArchBUILDCHECKBUILD BIN
oligo 1.4.0
Benilton Carvalho
Snapshot Date: 2008-08-08 00:12:03 -0700 (Fri, 08 Aug 2008)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_2/madman/Rpacks/oligo
Last Changed Rev: 31430 / Revision: 33132
Last Changed Date: 2008-04-29 16:50:18 -0700 (Tue, 29 Apr 2008)
lamb1 Linux (SUSE 10.1) / x86_64 [ OK ] OK 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
wellington Linux (openSUSE 10.3) / i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
Package: oligo
Version: 1.4.0
Command: /home/biocbuild/bbs-2.2-bioc/R/bin/R CMD build oligo
StartedAt: 2008-08-08 02:10:57 -0700 (Fri, 08 Aug 2008)
EndedAt: 2008-08-08 02:13:45 -0700 (Fri, 08 Aug 2008)
EllapsedTime: 168.8 seconds
RetCode: 0
Status: OK
PackageFile: oligo_1.4.0.tar.gz
PackageFileSize: 300.2 KiB

Command output

* checking for file 'oligo/DESCRIPTION' ... OK
* preparing 'oligo':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
* Installing *source* package 'oligo' ...
** libs
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include -I"/home/biocbuild/bbs-2.2-bioc/R/library/preprocessCore/include"   -fpic  -g -O2 -Wall -c basecontent.c -o basecontent.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include -I"/home/biocbuild/bbs-2.2-bioc/R/library/preprocessCore/include"   -fpic  -g -O2 -Wall -c baseProfile.c -o baseProfile.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include -I"/home/biocbuild/bbs-2.2-bioc/R/library/preprocessCore/include"   -fpic  -g -O2 -Wall -c rma2.c -o rma2.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include -I"/home/biocbuild/bbs-2.2-bioc/R/library/preprocessCore/include"   -fpic  -g -O2 -Wall -c rma_background2.c -o rma_background2.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include -I"/home/biocbuild/bbs-2.2-bioc/R/library/preprocessCore/include"   -fpic  -g -O2 -Wall -c rma_common.c -o rma_common.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include -I"/home/biocbuild/bbs-2.2-bioc/R/library/preprocessCore/include"   -fpic  -g -O2 -Wall -c trimmed.c -o trimmed.o
gcc -std=gnu99 -shared -L/usr/local/lib64 -o oligo.so basecontent.o baseProfile.o rma2.o rma_background2.o rma_common.o trimmed.o   
** R
** inst
** preparing package for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: splines
Loading required package: RSQLite
Loading required package: DBI
Loading required package: preprocessCore
Loading required package: AnnotationDbi
Loading required package: affxparser
Loading required package: oligoClasses
** help
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 >>> Building/Updating help pages for package 'oligo'
     Formats: text html latex example 
  DBPDInfo-class                    text    html    latex   example
  FeatureSet-class                  text    html    latex   example
  FeatureSetExtensions-class        text    html    latex   example
  Index-methods                     text    html    latex
  IntensityMatrix-methods           text    html    latex
  MAplot-methods                    text    html    latex
  PDInfo-class                      text    html    latex   example
  PDInfo-methods                    text    html    latex
  Sequences-methods                 text    html    latex
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  SnpSetExtensions-class            text    html    latex   example
  basecontent                       text    html    latex   example
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  getCrlmmSummaries                 text    html    latex
  getPlatformDesign                 text    html    latex
  hist                              text    html    latex
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  internals                         text    html    latex
  justSNPRMA                        text    html    latex   example
  kind                              text    html    latex
  list.celfiles                     text    html    latex
  manufacturer                      text    html    latex
  nProbes                           text    html    latex
  ncol                              text    html    latex
  oligo-package                     text    html    latex   example
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  rma                               text    html    latex
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  snprma                            text    html    latex
  snprmaSummaries                   text    html    latex
** building package indices ...
* DONE (oligo)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'oligo_1.4.0.tar.gz'