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Package 104/260HostnameOS / ArchBUILDCHECKBUILD BIN
globaltest 4.10.0
Jelle Goeman
Snapshot Date: 2008-08-08 00:12:03 -0700 (Fri, 08 Aug 2008)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_2/madman/Rpacks/globaltest
Last Changed Rev: 31430 / Revision: 33132
Last Changed Date: 2008-04-29 16:50:18 -0700 (Tue, 29 Apr 2008)
lamb1 Linux (SUSE 10.1) / x86_64  OK  OK 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
wellington Linux (openSUSE 10.3) / i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK [ WARNINGS ] OK 
Package: globaltest
Version: 4.10.0
Command: /Library/Frameworks/R.framework/Versions/2.7/Resources/bin/R CMD check globaltest_4.10.0.tar.gz
StartedAt: 2008-08-08 04:45:13 -0700 (Fri, 08 Aug 2008)
EndedAt: 2008-08-08 04:53:10 -0700 (Fri, 08 Aug 2008)
EllapsedTime: 476.3 seconds
RetCode: 0
Status: WARNINGS
CheckDir: globaltest.Rcheck
Warnings: 1

Command output

* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.2-bioc/meat/globaltest.Rcheck'
* using R version 2.7.1 (2008-06-23)
* using session charset: ASCII
* checking for file 'globaltest/DESCRIPTION' ... OK
* this is package 'globaltest' version '4.10.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'globaltest' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... WARNING
Invalid citation information in 'inst/CITATION':
  unexpected end of input at
  37:         "Bioinformatics 20, 93
  38: 
  Warning message:
  In parse(con) : invalid input found on input connection 'inst/CITATION'
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating globaltest-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating globaltest-manual.tex ... OK
* checking globaltest-manual.tex using pdflatex ... OK

WARNING: There was 1 warning, see
  /Users/biocbuild/bbs-2.2-bioc/meat/globaltest.Rcheck/00check.log
for details

globaltest.Rcheck/00install.out:

* Installing *source* package 'globaltest' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: multtest
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: survival
Loading required package: splines
Loading required package: AnnotationDbi
Loading required package: DBI
Loading required package: RSQLite
Loading required package: annotate
Loading required package: xtable
Creating a new generic function for "fitted.values" in "globaltest"
Creating a new generic function for "residuals" in "globaltest"
** help
 >>> Building/Updating help pages for package 'globaltest'
     Formats: text html latex example 
  GOstructure                       text    html    latex
  annotation.vandeVijver            text    html    latex
  checkerboard                      text    html    latex   example
  geneplot                          text    html    latex   example
  globaltest                        text    html    latex   example
  gostructure.vandeVijver           text    html    latex
  gt.barplot-class                  text    html    latex
  gt.result-class                   text    html    latex
  gtGO                              text    html    latex   example
  mlogit                            text    html    latex   example
  multtest                          text    html    latex   example
  permutations                      text    html    latex   example
  regressionplot                    text    html    latex   example
  sampleplot                        text    html    latex   example
  sampling                          text    html    latex   example
  vandeVijver                       text    html    latex
** building package indices ...
* DONE (globaltest)