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Package 83/260HostnameOS / ArchBUILDCHECKBUILD BIN
gcrma 2.12.1
Z. Wu
Snapshot Date: 2008-08-08 00:12:03 -0700 (Fri, 08 Aug 2008)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_2/madman/Rpacks/gcrma
Last Changed Rev: 31852 / Revision: 33132
Last Changed Date: 2008-05-21 10:58:38 -0700 (Wed, 21 May 2008)
lamb1 Linux (SUSE 10.1) / x86_64  OK  OK 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
wellington Linux (openSUSE 10.3) / i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK [ OK ]
Package: gcrma
Version: 2.12.1
Command: /Users/biocbuild/BBS/utils/build-universal.sh gcrma_2.12.1.tar.gz /Library/Frameworks/R.framework/Versions/2.7/Resources/bin/R gcrma.buildbin-libdir
StartedAt: 2008-08-08 06:49:34 -0700 (Fri, 08 Aug 2008)
EndedAt: 2008-08-08 06:49:42 -0700 (Fri, 08 Aug 2008)
EllapsedTime: 8.4 seconds
RetCode: 0
Status: OK
PackageFile: gcrma_2.12.1.tgz
PackageFileSize: 165.3 KiB

Command output

                INSTALLATION WITH 'R CMD INSTALL gcrma_2.12.1.tar.gz'

* Installing to library 'gcrma.buildbin-libdir'
* Installing *source* package 'gcrma' ...
** libs
** arch - i386
gcc -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -msse3    -fPIC  -g -O2 -march=nocona -c baseProfile.c -o baseProfile.o
gcc -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -msse3    -fPIC  -g -O2 -march=nocona -c computeAffinities.c -o computeAffinities.o
gcc -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -msse3    -fPIC  -g -O2 -march=nocona -c postmean.c -o postmean.o
gcc -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -mmacosx-version-min=10.4 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o gcrma.so baseProfile.o computeAffinities.o postmean.o   -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** arch - ppc
gcc -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -c baseProfile.c -o baseProfile.o
gcc -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -c computeAffinities.c -o computeAffinities.o
gcc -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -c postmean.c -o postmean.o
gcc -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -mmacosx-version-min=10.4 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o gcrma.so baseProfile.o computeAffinities.o postmean.o   -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: affy
Loading required package: affyio
Loading required package: preprocessCore
Loading required package: matchprobes
Loading required package: splines
** help
Note: removing empty section \examples
Note: removing empty section \examples
Note: removing empty section \examples
 >>> Building/Updating help pages for package 'gcrma'
     Formats: text html latex example 
  affinity.spline.coefs             text    html    latex
  bg.adjust.affinities              text    html    latex
  bg.adjust.gcrma                   text    html    latex   example
  bg.parameters.ns                  text    html    latex
  compute.affinities                text    html    latex
  fast.bkg                          text    html    latex
  gcrma                             text    html    latex   example
  gcrma.engine                      text    html    latex
  gcrma.engine2                     text    html    latex
  getCDF                            text    html    latex
  justGCRMA                         text    html    latex
** building package indices ...
* DONE (gcrma)