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Package 76/260HostnameOS / ArchBUILDCHECKBUILD BIN
flowClust 1.3.2
Raphael Gottardo
Snapshot Date: 2008-08-08 00:12:03 -0700 (Fri, 08 Aug 2008)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_2/madman/Rpacks/flowClust
Last Changed Rev: 32123 / Revision: 33132
Last Changed Date: 2008-06-04 09:45:58 -0700 (Wed, 04 Jun 2008)
lamb1 Linux (SUSE 10.1) / x86_64  OK  OK 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
wellington Linux (openSUSE 10.3) / i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK [ OK ] OK 
Package: flowClust
Version: 1.3.2
Command: /Library/Frameworks/R.framework/Versions/2.7/Resources/bin/R CMD check flowClust_1.3.2.tar.gz
StartedAt: 2008-08-08 04:27:29 -0700 (Fri, 08 Aug 2008)
EndedAt: 2008-08-08 04:31:04 -0700 (Fri, 08 Aug 2008)
EllapsedTime: 215.0 seconds
RetCode: 0
Status: OK
CheckDir: flowClust.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.2-bioc/meat/flowClust.Rcheck'
* using R version 2.7.1 (2008-06-23)
* using session charset: ASCII
* checking for file 'flowClust/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'flowClust' version '1.3.2'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'flowClust' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating flowClust-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating flowClust-manual.tex ... OK
* checking flowClust-manual.tex using pdflatex ... OK

flowClust.Rcheck/00install.out:

* Installing *source* package 'flowClust' ...
checking for gcc... gcc -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 accepts -g... yes
checking for gcc -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 option to accept ISO C89... none needed
checking for gsl-config... /usr/local/bin/gsl-config
checking for GSL - version >= 1.6... yes
configure: creating ./config.status
config.status: creating src/Makevars
** libs
** arch - i386
gcc -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -msse3    -fPIC  -g -O2 -march=nocona -c BoxCox.c -o BoxCox.o
gcc -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -msse3    -fPIC  -g -O2 -march=nocona -c flowClust.c -o flowClust.o
gcc -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -msse3    -fPIC  -g -O2 -march=nocona -c ranMVNT.c -o ranMVNT.o
gcc -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -mmacosx-version-min=10.4 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o flowClust.so BoxCox.o flowClust.o ranMVNT.o -lgsl -lgslcblas -lm  -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** R
** data
** inst
** preparing package for lazy loading
Loading required package: mnormt
Loading required package: mclust
use of mclust requires a license agreement
see http://www.stat.washington.edu/mclust/license.txt
Loading required package: ellipse
Loading required package: flowCore
Loading required package: rrcov
Loading required package: robustbase
Scalable Robust Estimators with High Breakdown Point (version 0.4-06)
Loading required package: feature
Loading required package: KernSmooth
KernSmooth 2.22 installed
Copyright M. P. Wand 1997
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.


Attaching package: 'flowCore'


	The following object(s) are masked from package:stats :

	 filter 

** help
 >>> Building/Updating help pages for package 'flowClust'
     Formats: text html latex example 
  Map                               text    html    latex   example
  SimulateMixture                   text    html    latex   example
  Subset                            text    html    latex
  box                               text    html    latex   example
  density                           text    html    latex   example
  dmvt                              text    html    latex
  flowClust-internal                text    html    latex
  flowClust-package                 text    html    latex
  flowClust                         text    html    latex   example
  hist                              text    html    latex   example
  plot.flowClust                    text    html    latex   example
  plot.flowCore                     text    html    latex
  plot.flowDens                     text    html    latex
  posterior                         text    html    latex   example
  rbox                              text    html    latex
  rituximab                         text    html    latex
  ruleOutliers                      text    html    latex   example
  show.flowClust                    text    html    latex
  show.tmixFilter                   text    html    latex
  split                             text    html    latex
  summary                           text    html    latex
  tmixFilter                        text    html    latex   example
** building package indices ...
* DONE (flowClust)