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Package 59/260HostnameOS / ArchBUILDCHECKBUILD BIN
cosmoGUI 1.6.0
Oliver Bembom
Snapshot Date: 2008-08-08 00:12:03 -0700 (Fri, 08 Aug 2008)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_2/madman/Rpacks/cosmoGUI
Last Changed Rev: 31430 / Revision: 33132
Last Changed Date: 2008-04-29 16:50:18 -0700 (Tue, 29 Apr 2008)
lamb1 Linux (SUSE 10.1) / x86_64  OK  OK 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
wellington Linux (openSUSE 10.3) / i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
Package: cosmoGUI
Version: 1.6.0
Command: E:\biocbld\bbs-2.2-bioc\R\bin\R.exe CMD check cosmoGUI_1.6.0.tar.gz
StartedAt: 2008-08-08 05:23:09 -0700 (Fri, 08 Aug 2008)
EndedAt: 2008-08-08 05:24:02 -0700 (Fri, 08 Aug 2008)
EllapsedTime: 53.3 seconds
RetCode: 0
Status: OK
CheckDir: cosmoGUI.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.2-bioc/meat/cosmoGUI.Rcheck'
* using R version 2.7.1 (2008-06-23)
* using session charset: ISO8859-1
* checking for file 'cosmoGUI/DESCRIPTION' ... OK
* this is package 'cosmoGUI' version '1.6.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'cosmoGUI' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
advanced: no visible binding for '<<-' assignment to 'COSMO.WIDGET'
advancedBuild: no visible binding for '<<-' assignment to
  'COSMO.CONSTRAINTS'
constraintBuilder: no visible binding for global variable
  'COSMO.CONSTRAINTS'
constraintBuilder: no visible binding for '<<-' assignment to
  'COSMO.CONSTRAINTS'
mysample: no visible binding for '<<-' assignment to 'COSMO.WIDGET'
sampleA: no visible binding for '<<-' assignment to 'COSMO.CONSTRAINTS'
sampleICBound: no visible binding for '<<-' assignment to
  'COSMO.CONSTRAINTS'
sampleICStep: no visible binding for '<<-' assignment to
  'COSMO.CONSTRAINTS'
sampleV: no visible binding for '<<-' assignment to 'COSMO.CONSTRAINTS'
subMotif: no visible binding for '<<-' assignment to
  'COSMO.CONSTRAINTS'
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating cosmoGUI-Ex.R ... OK
* checking examples ... OK
* creating cosmoGUI-manual.tex ... OK
* checking cosmoGUI-manual.tex using pdflatex ... OK

cosmoGUI.Rcheck/00install.out:

installing R.css in E:/biocbld/bbs-2.2-bioc/meat/cosmoGUI.Rcheck


---------- Making package cosmoGUI ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  installing R files
  preparing package cosmoGUI for lazy loading
Loading required package: tkWidgets
Loading required package: widgetTools
Loading required package: tcltk
Loading Tcl/Tk interface ... done
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: DynDoc
Loading required package: cosmo
Loading required package: seqLogo
Loading required package: grid
  installing man source files
  installing indices
  installing help
Note: removing empty section \seealso
Note: removing empty section \seealso
 >>> Building/Updating help pages for package 'cosmoGUI'
     Formats: text html latex example chm 
  constraintBuilder                 text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling e:\biocbld\bbs-2.2-bioc\meat\cosmoGUI.Rcheck\00_pkg_src\cosmoGUI\chm\cosmoGUI.chm


Compile time: 0 minutes, 0 seconds
2	Topics
2	Local links
0	Internet links
1	Graphic


Created e:\biocbld\bbs-2.2-bioc\meat\cosmoGUI.Rcheck\00_pkg_src\cosmoGUI\chm\cosmoGUI.chm, 16,675 bytes
Compression increased file by 9,081 bytes.
  adding MD5 sums

* DONE (cosmoGUI)