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Package 4/260HostnameOS / ArchBUILDCHECKBUILD BIN
adSplit 1.10.0
Claudio Lottaz
Snapshot Date: 2008-08-08 00:12:03 -0700 (Fri, 08 Aug 2008)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_2/madman/Rpacks/adSplit
Last Changed Rev: 31430 / Revision: 33132
Last Changed Date: 2008-04-29 16:50:18 -0700 (Tue, 29 Apr 2008)
lamb1 Linux (SUSE 10.1) / x86_64  OK  OK 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
wellington Linux (openSUSE 10.3) / i686  OK [ OK ]
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
Package: adSplit
Version: 1.10.0
Command: /home/biocbuild/bbs-2.2-bioc/R/bin/R CMD check adSplit_1.10.0.tar.gz
StartedAt: 2008-08-08 04:18:35 -0700 (Fri, 08 Aug 2008)
EndedAt: 2008-08-08 04:23:16 -0700 (Fri, 08 Aug 2008)
EllapsedTime: 281.0 seconds
RetCode: 0
Status: OK
CheckDir: adSplit.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.2-bioc/meat/adSplit.Rcheck'
* using R version 2.7.1 (2008-06-23)
* using session charset: ISO8859-1
* checking for file 'adSplit/DESCRIPTION' ... OK
* this is package 'adSplit' version '1.10.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'adSplit' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
figure_ccimage: no visible global function definition for 'cc_image'
figure_ccimage: no visible binding for global variable 'res'
figure_induced: no visible binding for global variable 'rossResult'
figure_induced: no visible global function definition for 'oneGOGraph'
figure_induced: no visible global function definition for 'GOGraph'
figure_induced: no visible global function definition for 'join'
figure_induced: no visible global function definition for 'nodes'
figure_induced: no visible global function definition for 'edges'
image.splitSet: no visible binding for '<<-' assignment to 'root.dist'
image.splitSet: no visible binding for global variable 'root.dist'
image.splitSet: no visible global function definition for
  'collect.lines'
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating adSplit-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating adSplit-manual.tex ... OK
* checking adSplit-manual.tex using pdflatex ... OK

adSplit.Rcheck/00install.out:

* Installing *source* package 'adSplit' ...
** libs
g++ -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c adSplit.cpp -o adSplit.o
adSplit.cpp: In function 'double tscore(double*, int, int, split&, isis_pars&)':
adSplit.cpp:253: warning: deprecated conversion from string constant to 'char*'
adSplit.cpp: In function 'void isis(char**, double*, int*, int*, int*, int*, int*, double*, int*)':
adSplit.cpp:466: warning: deprecated conversion from string constant to 'char*'
g++ -shared -L/usr/local/lib -o adSplit.so adSplit.o   
** R
** data
** inst
** preparing package for lazy loading
Loading required package: cluster
Loading required package: multtest
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: survival
Loading required package: splines
Loading required package: affy
Loading required package: affyio
Loading required package: preprocessCore
Loading required package: GO

******* Deprecation warning *******:

The package 'GO' is deprecated and will not be supported in the future. 

Instead we strongly reccomend that you should start using the 'GO.db' package. 

We hope you will enjoy these new packages.  If you still have questions, you can search 
(http://dir.gmane.org/gmane.science.biology.informatics.conductor) or ask the mailing list 
(http://bioconductor.org/docs/mailList.html).  


Loading required package: KEGG
** help
 >>> Building/Updating help pages for package 'adSplit'
     Formats: text html latex example 
  adSplit-internal                  text    html    latex
  adSplit                           text    html    latex   example
  diana2means                       text    html    latex   example
  drawRandomPS                      text    html    latex   example
  golubKEGGSplits                   text    html    latex   example
  hist.splitSet                     text    html    latex   example
  image.splitSet                    text    html    latex   example
  makeEID2PROBESenv                 text    html    latex   example
  print.split                       text    html    latex
  print.splitSet                    text    html    latex   example
  randomDiana2means                 text    html    latex   example
** building package indices ...
* DONE (adSplit)