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Package 90/260HostnameOS / ArchBUILDCHECKBUILD BIN
GeneRfold 0.2.0
Antoine Lucas
Snapshot Date: 2008-08-08 00:12:03 -0700 (Fri, 08 Aug 2008)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_2/madman/Rpacks/GeneRfold
Last Changed Rev: 31430 / Revision: 33132
Last Changed Date: 2008-04-29 16:50:18 -0700 (Tue, 29 Apr 2008)
lamb1 Linux (SUSE 10.1) / x86_64  OK  OK 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
wellington Linux (openSUSE 10.3) / i686  OK [ OK ]
liverpool Windows Server 2003 R2 (32-bit) / x64 N O T   S U P P O R T E D
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
Package: GeneRfold
Version: 0.2.0
Command: /home/biocbuild/bbs-2.2-bioc/R/bin/R CMD check GeneRfold_0.2.0.tar.gz
StartedAt: 2008-08-08 06:01:09 -0700 (Fri, 08 Aug 2008)
EndedAt: 2008-08-08 06:01:43 -0700 (Fri, 08 Aug 2008)
EllapsedTime: 34.5 seconds
RetCode: 0
Status: OK
CheckDir: GeneRfold.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.2-bioc/meat/GeneRfold.Rcheck'
* using R version 2.7.1 (2008-06-23)
* using session charset: ISO8859-1
* checking for file 'GeneRfold/DESCRIPTION' ... OK
* this is package 'GeneRfold' version '0.2.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'GeneRfold' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating GeneRfold-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating GeneRfold-manual.tex ... OK
* checking GeneRfold-manual.tex using pdflatex ... OK

GeneRfold.Rcheck/00install.out:

* Installing *source* package 'GeneRfold' ...
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ANSI C... none needed
checking for main in -lRNA... yes
configure: creating ./config.status
config.status: creating src/Makevars
** libs
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/usr/local/include/  -fPIC -Wno-conversion -I/usr/local/include    -fpic  -g -O2 -Wall -c viennaR.c -o viennaR.o
gcc -std=gnu99 -shared -L/usr/local/lib -o GeneRfold.so viennaR.o -L/usr/local/lib/ -lRNA -fPIC   
** R
** inst
** help
 >>> Building/Updating help pages for package 'GeneRfold'
     Formats: text html latex example 
  fold                              text    html    latex   example
  rnaplot                           text    html    latex   example
** building package indices ...
* DONE (GeneRfold)