xcms 1.11.16
Colin A. Smith
| Snapshot Date: 2008-04-09 00:13:10 -0700 (Wed, 09 Apr 2008) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/xcms | | Last Changed Rev: 30928 / Revision: 30951 | | Last Changed Date: 2008-04-08 12:41:03 -0700 (Tue, 08 Apr 2008) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | ERROR | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | ERROR | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | ERROR | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | [ WARNINGS ] | OK |
| pelham | Mac OS X Leopard (10.5.1) / i386 | OK | ERROR | OK |
* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.2-bioc/meat/xcms.Rcheck'
* using R version 2.7.0 Under development (unstable) (2008-03-10 r44730)
* using session charset: ISO8859-1
* checking for file 'xcms/DESCRIPTION' ... OK
* this is package 'xcms' version '1.11.16'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'xcms' can be installed ... WARNING
Found the following significant warnings:
missing link(s): defaultMethod
missing link(s): profileMatrix
missing link(s): profileMatrix genProfile genProfile
missing link(s): processRaws
missing link(s): defaultMethod defaultMethod<-
See 'E:/biocbld/bbs-2.2-bioc/meat/xcms.Rcheck/00install.out' for details.
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
KeggSearch: no visible binding for global variable 'masfile'
KeggSearch: no visible binding for global variable 'type'
running: multiple local function definitions for 'funct' with different
formal arguments
* checking Rd files ... WARNING
Rd files without 'description':
findPeaks-methods.Rd
findPeaks.matchedFilter-methods.Rd
These entries are required in an Rd file.
See the chapter 'Writing R documentation files' in manual 'Writing R
Extensions'.
* checking Rd cross-references ... WARNING
Missing link(s) in documentation object 'setStage.Rd':
defaultMethod
Missing link(s) in documentation object 'xcmsProfile-class.Rd':
profileMatrix
Missing link(s) in documentation object 'xcmsRaw.Rd':
profileMatrix genProfile genProfile
Missing link(s) in documentation object 'xcmsSet.Rd':
processRaws
Missing link(s) in documentation object 'xcmsStage-class.Rd':
defaultMethod defaultMethod<-
* checking for missing documentation entries ... WARNING
Undocumented code objects:
defaultMethod defaultMethod<- fillPeaks.extract fillPeaks.mean
fillPeaksProto fillPeaksProto<- findComps findCompsProto
findCompsProto<- findPeaksProto findPeaksProto<- genProfile
genProfileProto genProfileProto<- group.density groupProto
groupProto<- identifyCompounds identifyCompoundsProto
identifyCompoundsProto<- normalize normalizeProto normalizeProto<-
processRaws processRaws.generic processRawsProto processRawsProto<-
profileMatrix profileMatrix.bin profileMatrix.binlin
profileMatrix.binlinbase profileMatrix.intlin profileMatrix.maxidx
profileMatrix<- profileMatrixProto profileMatrixProto<-
promptProtocol promptStage protocolClasses removeProfileBaseline
removeProfileBaseline.median removeProfileBaselineProto
removeProfileBaselineProto<- retcor.smooth retcorProto retcorProto<-
smoothProfile smoothProfileProto smoothProfileProto<- summarize
summarizeProto summarizeProto<-
Undocumented S4 classes:
logicalORlanguage numericORlanguage xcmsProtoFillPeaks
xcmsProtoFindComps xcmsProtoFindPeaks xcmsProtoFindPeaksCentWave
xcmsProtoFindPeaksMatchedFilter xcmsProtoFindPeaksMS1
xcmsProtoFindPeaksMSW xcmsProtoGenProfile xcmsProtoGenProfileGeneric
xcmsProtoGroup xcmsProtoGroupDensity xcmsProtoGroupMzClust
xcmsProtoIdentifyCompounds xcmsProtoNormalize xcmsProtoProcessRaws
xcmsProtoProcessRawsGeneric xcmsProtoProfileMatrix
xcmsProtoProfileMatrixBase xcmsProtoProfileMatrixBin
xcmsProtoProfileMatrixBinlin xcmsProtoProfileMatrixBinlinbase
xcmsProtoProfileMatrixIntlin xcmsProtoProfileMatrixMaxidx
xcmsProtoRemoveProfileBaseline xcmsProtoRemoveProfileBaselineMedian
xcmsProtoRetcor xcmsProtoRetcorSmooth xcmsProtoSmoothProfile
xcmsProtoSummarize xcmsStageFillPeaks xcmsStageFindComps
xcmsStageFindPeaks xcmsStageGenProfile xcmsStageGroup
xcmsStageIdentifyCompounds xcmsStageNormalize xcmsStageProcessRaws
xcmsStageProfileMatrix xcmsStageRemoveProfileBaseline xcmsStageRetcor
xcmsStageSmoothProfile xcmsStageSummarize
Undocumented S4 methods:
generic 'defaultMethod' and siglist 'xcmsStage'
generic 'defaultMethod' and siglist 'character'
generic 'defaultMethod<-' and siglist 'xcmsStage'
generic 'defaultMethod<-' and siglist 'character'
generic 'dispName' and siglist 'xcmsStageRemoveProfileBaseline'
generic 'dispName' and siglist 'xcmsStageSmoothProfile'
generic 'dispName' and siglist 'xcmsProtoRemoveProfileBaselineMedian'
generic 'dispName' and siglist 'xcmsStageFindPeaks'
generic 'dispName' and siglist 'xcmsProtoFindPeaksMatchedFilter'
generic 'dispName' and siglist 'xcmsProtoFindPeaksCentWave'
generic 'dispName' and siglist 'xcmsProtoFindPeaksMS1'
generic 'dispName' and siglist 'xcmsProtoFindPeaksMSW'
generic 'dispName' and siglist 'xcmsStageGenProfile'
generic 'dispName' and siglist 'xcmsProtoGenProfileGeneric'
generic 'dispName' and siglist 'xcmsStageProfileMatrix'
generic 'dispName' and siglist 'xcmsProtoProfileMatrixIntlin'
generic 'dispName' and siglist 'xcmsProtoProfileMatrixBinlin'
generic 'dispName' and siglist 'xcmsProtoProfileMatrixBin'
generic 'dispName' and siglist 'xcmsProtoProfileMatrixBinlinbase'
generic 'dispName' and siglist 'xcmsProtoProfileMatrixMaxidx'
generic 'dispName' and siglist 'xcmsStageProcessRaws'
generic 'dispName' and siglist 'xcmsProtoProcessRawsGeneric'
generic 'dispName' and siglist 'xcmsStageFindComps'
generic 'dispName' and siglist 'xcmsStageRetcor'
generic 'dispName' and siglist 'xcmsStageFillPeaks'
generic 'dispName' and siglist 'xcmsStageSummarize'
generic 'dispName' and siglist 'xcmsStageNormalize'
generic 'dispName' and siglist 'xcmsStageIdentifyCompounds'
generic 'dispName' and siglist 'xcmsStageGroup'
generic 'dispName' and siglist 'xcmsProtoGroupDensity'
generic 'dispName' and siglist 'xcmsProtoGroupMzClust'
generic 'dispName' and siglist 'xcmsProtoRetcorSmooth'
generic 'dispName' and siglist 'xcmsProtoFillPeaksExtract'
generic 'dispName' and siglist 'xcmsProtoFillPeaksMean'
generic 'fillPeaks.extract' and siglist 'xcmsSet'
generic 'fillPeaks.mean' and siglist 'xcmsSet'
generic 'fillPeaksProto' and siglist 'xcmsPipeline'
generic 'fillPeaksProto' and siglist 'xcmsSet'
generic 'fillPeaksProto<-' and siglist 'xcmsPipeline'
generic 'findComps' and siglist 'xcmsSet'
generic 'findCompsProto' and siglist 'xcmsPipeline'
generic 'findCompsProto' and siglist 'xcmsSet'
generic 'findCompsProto<-' and siglist 'xcmsPipeline'
generic 'findPeaksProto' and siglist 'xcmsPipeline'
generic 'findPeaksProto' and siglist 'xcmsPeaks'
generic 'findPeaksProto<-' and siglist 'xcmsPipeline'
generic 'genProfile' and siglist 'xcmsRaw'
generic 'genProfileProto' and siglist 'xcmsPipeline'
generic 'genProfileProto' and siglist 'xcmsRaw'
generic 'genProfileProto<-' and siglist 'xcmsPipeline'
generic 'genProfileProto<-' and siglist 'xcmsRaw'
generic 'group.density' and siglist 'xcmsSet'
generic 'groupProto' and siglist 'xcmsPipeline'
generic 'groupProto' and siglist 'xcmsSet'
generic 'groupProto<-' and siglist 'xcmsPipeline'
generic 'identifyCompounds' and siglist 'xcmsSet'
generic 'identifyCompoundsProto' and siglist 'xcmsPipeline'
generic 'identifyCompoundsProto' and siglist 'xcmsSet'
generic 'identifyCompoundsProto<-' and siglist 'xcmsPipeline'
generic 'inType' and siglist 'xcmsStageRemoveProfileBaseline'
generic 'inType' and siglist 'xcmsProtoRemoveProfileBaseline'
generic 'inType' and siglist 'xcmsStageSmoothProfile'
generic 'inType' and siglist 'xcmsProtoSmoothProfile'
generic 'inType' and siglist 'xcmsStageFindPeaks'
generic 'inType' and siglist 'xcmsProtoFindPeaks'
generic 'inType' and siglist 'xcmsStageGenProfile'
generic 'inType' and siglist 'xcmsProtoGenProfile'
generic 'inType' and siglist 'xcmsStageProfileMatrix'
generic 'inType' and siglist 'xcmsProtoProfileMatrix'
generic 'inType' and siglist 'xcmsStageProcessRaws'
generic 'inType' and siglist 'xcmsProtoProcessRaws'
generic 'inType' and siglist 'xcmsStageFindComps'
generic 'inType' and siglist 'xcmsProtoFindComps'
generic 'inType' and siglist 'xcmsStageRetcor'
generic 'inType' and siglist 'xcmsProtoRetcor'
generic 'inType' and siglist 'xcmsStageFillPeaks'
generic 'inType' and siglist 'xcmsProtoFillPeaks'
generic 'inType' and siglist 'xcmsStageSummarize'
generic 'inType' and siglist 'xcmsProtoSummarize'
generic 'inType' and siglist 'xcmsStageNormalize'
generic 'inType' and siglist 'xcmsProtoNormalize'
generic 'inType' and siglist 'xcmsStageIdentifyCompounds'
generic 'inType' and siglist 'xcmsProtoIdentifyCompounds'
generic 'inType' and siglist 'xcmsStageGroup'
generic 'inType' and siglist 'xcmsProtoGroup'
generic 'normalize' and siglist 'xcmsSet'
generic 'normalizeProto' and siglist 'xcmsPipeline'
generic 'normalizeProto' and siglist 'xcmsSet'
generic 'normalizeProto<-' and siglist 'xcmsPipeline'
generic 'outType' and siglist 'xcmsStageRemoveProfileBaseline'
generic 'outType' and siglist 'xcmsProtoRemoveProfileBaseline'
generic 'outType' and siglist 'xcmsStageSmoothProfile'
generic 'outType' and siglist 'xcmsProtoSmoothProfile'
generic 'outType' and siglist 'xcmsStageFindPeaks'
generic 'outType' and siglist 'xcmsProtoFindPeaks'
generic 'outType' and siglist 'xcmsStageGenProfile'
generic 'outType' and siglist 'xcmsProtoGenProfile'
generic 'outType' and siglist 'xcmsStageProfileMatrix'
generic 'outType' and siglist 'xcmsProtoProfileMatrix'
generic 'outType' and siglist 'xcmsStageProcessRaws'
generic 'outType' and siglist 'xcmsProtoProcessRaws'
generic 'outType' and siglist 'xcmsStageFindComps'
generic 'outType' and siglist 'xcmsProtoFindComps'
generic 'outType' and siglist 'xcmsStageRetcor'
generic 'outType' and siglist 'xcmsProtoRetcor'
generic 'outType' and siglist 'xcmsStageFillPeaks'
generic 'outType' and siglist 'xcmsProtoFillPeaks'
generic 'outType' and siglist 'xcmsStageSummarize'
generic 'outType' and siglist 'xcmsProtoSummarize'
generic 'outType' and siglist 'xcmsStageNormalize'
generic 'outType' and siglist 'xcmsProtoNormalize'
generic 'outType' and siglist 'xcmsStageIdentifyCompounds'
generic 'outType' and siglist 'xcmsProtoIdentifyCompounds'
generic 'outType' and siglist 'xcmsStageGroup'
generic 'outType' and siglist 'xcmsProtoGroup'
generic 'performDelegate' and siglist
'xcmsProtoRemoveProfileBaselineMedian,xcmsProfile'
generic 'performDelegate' and siglist
'xcmsProtoFindPeaksMatchedFilter,xcmsRaw'
generic 'performDelegate' and siglist
'xcmsProtoFindPeaksCentWave,xcmsRaw'
generic 'performDelegate' and siglist 'xcmsProtoFindPeaksMS1,xcmsRaw'
generic 'performDelegate' and siglist 'xcmsProtoFindPeaksMSW,xcmsRaw'
generic 'performDelegate' and siglist
'xcmsProtoGenProfileGeneric,xcmsRaw'
generic 'performDelegate' and siglist
'xcmsProtoProfileMatrixIntlin,xcmsRaw'
generic 'performDelegate' and siglist
'xcmsProtoProfileMatrixBinlin,xcmsRaw'
generic 'performDelegate' and siglist
'xcmsProtoProfileMatrixBin,xcmsRaw'
generic 'performDelegate' and siglist
'xcmsProtoProfileMatrixBinlinbase,xcmsRaw'
generic 'performDelegate' and siglist
'xcmsProtoProfileMatrixMaxidx,xcmsRaw'
generic 'performDelegate' and siglist
'xcmsProtoProcessRawsGeneric,xcmsSet'
generic 'performDelegate' and siglist 'xcmsProtoGroupDensity,xcmsSet'
generic 'performDelegate' and siglist 'xcmsProtoGroupMzClust,xcmsSet'
generic 'performDelegate' and siglist 'xcmsProtoRetcorSmooth,xcmsSet'
generic 'performDelegate' and siglist
'xcmsProtoFillPeaksExtract,xcmsSet'
generic 'performDelegate' and siglist
'xcmsProtoFillPeaksMean,xcmsSet'
generic 'processRaws.generic' and siglist 'xcmsSet'
generic 'processRaws' and siglist 'xcmsSet'
generic 'processRawsProto' and siglist 'xcmsPipeline'
generic 'processRawsProto' and siglist 'xcmsSet'
generic 'processRawsProto<-' and siglist 'xcmsPipeline'
generic 'profileMatrix.bin' and siglist 'xcmsRaw'
generic 'profileMatrix.binlin' and siglist 'xcmsRaw'
generic 'profileMatrix.binlinbase' and siglist 'xcmsRaw'
generic 'profileMatrix.intlin' and siglist 'xcmsRaw'
generic 'profileMatrix.maxidx' and siglist 'xcmsRaw'
generic 'profileMatrix' and siglist 'xcmsRaw'
generic 'profileMatrix<-' and siglist 'xcmsRaw,xcmsProfile'
generic 'profileMatrixProto' and siglist 'xcmsPipeline'
generic 'profileMatrixProto' and siglist 'xcmsProfile'
generic 'profileMatrixProto' and siglist 'xcmsRaw'
generic 'profileMatrixProto<-' and siglist 'xcmsPipeline'
generic 'profileMatrixProto<-' and siglist 'xcmsRaw'
generic 'protocolClasses' and siglist 'xcmsStage'
generic 'removeProfileBaseline.median' and siglist 'xcmsProfile'
generic 'removeProfileBaseline' and siglist 'xcmsProfile'
generic 'removeProfileBaselineProto' and siglist 'xcmsPipeline'
generic 'removeProfileBaselineProto' and siglist 'xcmsProfile'
generic 'removeProfileBaselineProto<-' and siglist 'xcmsPipeline'
generic 'retcor.smooth' and siglist 'xcmsSet'
generic 'retcorProto' and siglist 'xcmsPipeline'
generic 'retcorProto' and siglist 'xcmsSet'
generic 'retcorProto<-' and siglist 'xcmsPipeline'
generic 'smoothProfile' and siglist 'xcmsProfile'
generic 'smoothProfileProto' and siglist 'xcmsPipeline'
generic 'smoothProfileProto' and siglist 'xcmsProfile'
generic 'smoothProfileProto<-' and siglist 'xcmsPipeline'
generic 'summarize' and siglist 'xcmsSet'
generic 'summarizeProto' and siglist 'xcmsPipeline'
generic 'summarizeProto' and siglist 'xcmsSet'
generic 'summarizeProto<-' and siglist 'xcmsPipeline'
All user-level objects in a package (including S4 classes and methods)
should have documentation entries.
See the chapter 'Writing R documentation files' in manual 'Writing R
Extensions'.
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating xcms-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating xcms-manual.tex ... OK
* checking xcms-manual.tex using pdflatex ... OK
WARNING: There were 4 warnings, see
E:/biocbld/bbs-2.2-bioc/meat/xcms.Rcheck/00check.log
for details
installing R.css in E:/biocbld/bbs-2.2-bioc/meat/xcms.Rcheck
---------- Making package xcms ------------
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
making DLL ...
making base64.d from base64.c
making mzClust_hclust.d from mzClust_hclust.c
making mzboxes.d from mzboxes.c
making netCDF.d from netCDF.c
making ramp.d from ramp.c
making rampR.d from rampR.c
making util.d from util.c
making xcms.d from xcms.c
gcc -std=gnu99 -I./win -D_MSC_VER -Ie:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c base64.c -o base64.o
base64.c:18: warning: 'encode_group' defined but not used
base64.c:46: warning: 'decode_group' defined but not used
gcc -std=gnu99 -I./win -D_MSC_VER -Ie:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c mzClust_hclust.c -o mzClust_hclust.o
gcc -std=gnu99 -I./win -D_MSC_VER -Ie:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c mzboxes.c -o mzboxes.o
gcc -std=gnu99 -I./win -D_MSC_VER -Ie:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c netCDF.c -o netCDF.o
gcc -std=gnu99 -I./win -D_MSC_VER -Ie:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c ramp.c -o ramp.o
ramp.c: In function 'readPeaks':
ramp.c:1545: warning: 'deltaMass' may be used uninitialized in this function
ramp.c:1546: warning: 'multiplier' may be used uninitialized in this function
ramp.c:1544: warning: 'lastMass' may be used uninitialized in this function
gcc -std=gnu99 -I./win -D_MSC_VER -Ie:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c rampR.c -o rampR.o
gcc -std=gnu99 -I./win -D_MSC_VER -Ie:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c util.c -o util.o
gcc -std=gnu99 -I./win -D_MSC_VER -Ie:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c xcms.c -o xcms.o
xcms.c: In function 'ProfBinLin':
xcms.c:11: warning: 'ypre' may be used uninitialized in this function
xcms.c:11: warning: 'xpre' may be used uninitialized in this function
xcms.c: In function 'ProfBinLinBase':
xcms.c:62: warning: 'ipre' may be used uninitialized in this function
windres --preprocessor="gcc -E -xc -DRC_INVOKED" -I e:/biocbld/bbs-2.2-bioc/R/include -i xcms_res.rc -o xcms_res.o
gcc -std=gnu99 -shared -s -o xcms.dll xcms.def base64.o mzClust_hclust.o mzboxes.o netCDF.o ramp.o rampR.o util.o xcms.o xcms_res.o -Le:/biocbld/bbs-2.2-bioc/R/bin -L./win -lws2_32 -lnetcdf -lRzlib -lR
... DLL made
installing DLL
installing R files
installing inst files
preparing package xcms for lazy loading
Warning in namespaceImportFrom(ns, loadNamespace(i[[1]], c(lib.loc, .libPaths())), :
replacing previous import: plot
installing man source files
installing indices
installing help
Note: removing empty section \seealso
Note: removing empty section \seealso
Note: removing empty section \description
Note: removing empty section \description
Note: removing empty section \description
Note: removing empty section \description
>>> Building/Updating help pages for package 'xcms'
Formats: text html latex example chm
SSgauss text html latex chm
c.xcmsSet text html latex chm
colMax text html latex chm
collect-methods text html latex chm
descendZero text html latex example chm
diffreport-methods text html latex chm
dispName-methods text html latex chm
doubleMatrix text html latex chm
etg text html latex chm
explore-methods text html latex chm
fillPeaks-methods text html latex chm
filtfft text html latex chm
findEqualGreater text html latex chm
findMZBoxes-methods text html latex chm
findPeaks-methods text html latex chm
findPeaks.MS1-methods text html latex chm
findPeaks.MSW-methods text html latex chm
findPeaks.centWave-methods text html latex chm
findPeaks.matchedFilter-methods text html latex chm
findProtocols-methods text html latex chm
getEIC-methods text html latex chm
getPeaks-methods text html latex chm
getScan-methods text html latex chm
getSpec-methods text html latex chm
group-methods text html latex chm
group.mzClust text html latex example chm
groupnames-methods text html latex chm
groupval-methods text html latex chm
image.xcmsRaw text html latex chm
inType-methods text html latex chm
medianFilter text html latex example chm
na.flatfill text html latex chm
netCDF text html latex chm
outType-methods text html latex chm
panel.cor text html latex chm
perform-methods text html latex chm
pipeline-methods text html latex chm
plot.xcmsEIC text html latex chm
plotChrom-methods text html latex chm
plotPeaks-methods text html latex chm
plotRaw-methods text html latex chm
plotScan-methods text html latex chm
plotSpec-methods text html latex chm
plotSurf-methods text html latex chm
plotTIC-methods text html latex chm
plotrt-methods text html latex chm
profGenerate text html latex chm
profMedFilt-methods text html latex chm
profMethod-methods text html latex chm
profRange-methods text html latex chm
profStep-methods text html latex chm
protocol-methods text html latex chm
pval text html latex chm
ramp text html latex chm
rawEIC-methods text html lateNote: removing empty section \note
Note: removing empty section \note
x chm
rawMat-methods text html latex chm
rectUnique text html latex example chm
retcor-methods text html latex chm
retexp text html latex chm
sampnames-methods text html latex chm
setProtocol text html latex example chm
setStage text html latex chm
missing link(s): defaultMethod
specNoise text html latex chm
specPeaks text html latex chm
split.xcmsSet text html latex chm
widget-methods text html latex chm
xcmsData-class text html latex chm
xcmsEIC-class text html latex chm
xcmsFragments-class text html latex chm
xcmsFragments text html latex chm
xcmsPeaks-class text html latex chm
xcmsPipeline-class text html latex chm
xcmsPipelineProfile-class text html latex chm
xcmsProfile-class text html latex chm
missing link(s): profileMatrix
xcmsProtocol-class text html latex chm
xcmsProtocol text html latex example chm
xcmsRaw-class text html latex chm
xcmsRaw text html latex chm
missing link(s): profileMatrix genProfile genProfile
xcmsSet-class text html latex chm
xcmsSet text html latex chm
missing link(s): processRaws
xcmsStage-class text html latex chm
missing link(s): defaultMethod defaultMethod<-
xcmsStage text html latex example chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\bbs-2.2-bioc\meat\xcms.Rcheck\00_pkg_src\xcms\chm\xcms.chm
Compile time: 0 minutes, 1 second
83 Topics
492 Local links
9 Internet links
1 Graphic
Created e:\biocbld\bbs-2.2-bioc\meat\xcms.Rcheck\00_pkg_src\xcms\chm\xcms.chm, 111,831 bytes
Compression decreased file by 204,468 bytes.
adding MD5 sums
* DONE (xcms)