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Package 221/264HostnameOS / ArchBUILDCHECKBUILD BIN
safe 2.0.1
William T. Barry
Snapshot Date: 2008-04-09 00:13:10 -0700 (Wed, 09 Apr 2008)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/safe
Last Changed Rev: 30242 / Revision: 30951
Last Changed Date: 2008-02-27 15:00:55 -0800 (Wed, 27 Feb 2008)
lamb1 Linux (SUSE 10.1) / x86_64  OK  OK 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
wellington Linux (openSUSE 10.3) / i686  OK [ OK ]
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.1) / i386  OK  OK  OK 
Package: safe
Version: 2.0.1
Command: /home/biocbuild/bbs-2.2-bioc/R/bin/R CMD check safe_2.0.1.tar.gz
StartedAt: 2008-04-09 10:33:47 -0700 (Wed, 09 Apr 2008)
EndedAt: 2008-04-09 10:42:03 -0700 (Wed, 09 Apr 2008)
EllapsedTime: 496.1 seconds
RetCode: 0
Status: OK
CheckDir: safe.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.2-bioc/meat/safe.Rcheck'
* using R version 2.7.0 beta (2008-04-07 r45159)
* using session charset: ISO8859-1
* checking for file 'safe/DESCRIPTION' ... OK
* this is package 'safe' version '2.0.1'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'safe' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating safe-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating safe-manual.tex ... OK
* checking safe-manual.tex using pdflatex ... OK

safe.Rcheck/00install.out:

* Installing *source* package 'safe' ...
** R
** inst
** preparing package for lazy loading
Loading required package: SparseM
Package SparseM (0.77) loaded.  To cite, see citation("SparseM")
Loading required package: GO
Loading required package: annotate
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: AnnotationDbi
Loading required package: DBI
Loading required package: RSQLite
Loading required package: xtable
** help
 >>> Building/Updating help pages for package 'safe'
     Formats: text html latex example 
  SAFE-class                        text    html    latex
  gene.results                      text    html    latex
  getCmatrix                        text    html    latex   example
  safe-internal                     text    html    latex
  safe                              text    html    latex   example
  safedag                           text    html    latex
  safeplot                          text    html    latex   example
** building package indices ...
* DONE (safe)