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Package 207/264HostnameOS / ArchBUILDCHECKBUILD BIN
rhdf5 1.7.1
Biocore Team c/o BioC user list
Snapshot Date: 2008-04-09 00:13:10 -0700 (Wed, 09 Apr 2008)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/rhdf5
Last Changed Rev: 30639 / Revision: 30951
Last Changed Date: 2008-03-24 10:46:05 -0700 (Mon, 24 Mar 2008)
lamb1 Linux (SUSE 10.1) / x86_64  ERROR  skipped 
wilson2 Linux (openSUSE 10.3) / x86_64  ERROR  skipped 
wellington Linux (openSUSE 10.3) / i686 [ ERROR ] skipped 
liverpool Windows Server 2003 R2 (32-bit) / x64  ERROR  skipped  skipped 
pelham Mac OS X Leopard (10.5.1) / i386  ERROR  skipped  skipped 
Package: rhdf5
Version: 1.7.1
Command: /home/biocbuild/bbs-2.2-bioc/R/bin/R CMD build rhdf5
StartedAt: 2008-04-09 03:28:02 -0700 (Wed, 09 Apr 2008)
EndedAt: 2008-04-09 03:28:06 -0700 (Wed, 09 Apr 2008)
EllapsedTime: 4.7 seconds
RetCode: 1
Status: ERROR
PackageFile: None
PackageFileSize: NA

Command output

* checking for file 'rhdf5/DESCRIPTION' ... OK
* preparing 'rhdf5':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
* Installing *source* package 'rhdf5' ...
checking for gcc... gcc
checking for C compiler default output... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ANSI C... none needed
checking how to run the C preprocessor... gcc -E
checking for egrep... grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for hdf5... yes
checking for H5Fopen in -lhdf5... no
checking hdf5.h usability... no
checking hdf5.h presence... no
checking for hdf5.h... no
checking hdf5 in /sw... failed
configure: error: please specify a valid hdf5 installation with --with-hdf5=DIR
ERROR: configuration failed for package 'rhdf5'
** Removing '/tmp/Rinst1169445246/rhdf5'
 ERROR
Installation failed.
Removing '/tmp/Rinst1169445246'