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Package 208/264HostnameOS / ArchBUILDCHECKBUILD BIN
rHVDM 1.5.1
Martino Barenco
Snapshot Date: 2008-04-09 00:13:10 -0700 (Wed, 09 Apr 2008)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/rHVDM
Last Changed Rev: 30582 / Revision: 30951
Last Changed Date: 2008-03-19 07:15:52 -0700 (Wed, 19 Mar 2008)
lamb1 Linux (SUSE 10.1) / x86_64  OK  WARNINGS 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  WARNINGS 
wellington Linux (openSUSE 10.3) / i686  OK [ WARNINGS ]
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  WARNINGS  OK 
pelham Mac OS X Leopard (10.5.1) / i386  OK  WARNINGS  OK 
Package: rHVDM
Version: 1.5.1
Command: /home/biocbuild/bbs-2.2-bioc/R/bin/R CMD check rHVDM_1.5.1.tar.gz
StartedAt: 2008-04-09 10:19:35 -0700 (Wed, 09 Apr 2008)
EndedAt: 2008-04-09 10:28:09 -0700 (Wed, 09 Apr 2008)
EllapsedTime: 513.9 seconds
RetCode: 0
Status: WARNINGS
CheckDir: rHVDM.Rcheck
Warnings: 1

Command output

* checking for working pdflatex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.2-bioc/meat/rHVDM.Rcheck'
* using R version 2.7.0 beta (2008-04-07 r45159)
* using session charset: ISO8859-1
* checking for file 'rHVDM/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'rHVDM' version '1.5.1'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'rHVDM' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
.returnplattidnumber: no visible binding for global variable
  'rHVDMplattforms'
.returnsupportedplattforms: no visible binding for global variable
  'rHVDMplattforms'
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... WARNING
Functions/methods with usage in documentation object 'estimerrors' but not in code:
  estimerrors

* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating rHVDM-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating rHVDM-manual.tex ... OK
* checking rHVDM-manual.tex using pdflatex ... OK

WARNING: There was 1 warning, see
  /loc/home/biocbuild/bbs-2.2-bioc/meat/rHVDM.Rcheck/00check.log
for details

rHVDM.Rcheck/00install.out:

* Installing *source* package 'rHVDM' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: R2HTML
Loading required package: affy
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: affyio
Loading required package: preprocessCore
Loading required package: minpack.lm

This product includes software developed by the University of Chicago, as
Operator of Argonne National Laboratory.

See the LICENSE file distributed with the minpack.lm source code or
http://www.netlib.org/minpack/disclaimer for the full license.

** help
 >>> Building/Updating help pages for package 'rHVDM'
     Formats: text html latex example 
  HVDMcheck                         text    html    latex   example
  HVDMreport                        text    html    latex   example
  estimerrors                       text    html    latex   example
  fitgene                           text    html    latex   example
  fiveGyMAS5                        text    html    latex
  genestoscreen                     text    html    latex
  p53traingenes                     text    html    latex
  rHVDMplattforms                   text    html    latex
  screening                         text    html    latex   example
  training                          text    html    latex   example
** building package indices ...
* DONE (rHVDM)