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Package 188/264HostnameOS / ArchBUILDCHECKBUILD BIN
prism 0.1.2
Raphael Gottardo
Snapshot Date: 2008-04-09 00:13:10 -0700 (Wed, 09 Apr 2008)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/prism
Last Changed Rev: 30615 / Revision: 30951
Last Changed Date: 2008-03-21 12:42:17 -0700 (Fri, 21 Mar 2008)
lamb1 Linux (SUSE 10.1) / x86_64  OK  WARNINGS 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  WARNINGS 
wellington Linux (openSUSE 10.3) / i686  OK  WARNINGS 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  WARNINGS [ OK ]
pelham Mac OS X Leopard (10.5.1) / i386  OK  WARNINGS  OK 
Package: prism
Version: 0.1.2
Command: E:\biocbld\bbs-2.2-bioc\R\bin\R.exe CMD INSTALL --build --library=prism.buildbin-libdir prism_0.1.2.tar.gz
StartedAt: 2008-04-09 08:30:52 -0700 (Wed, 09 Apr 2008)
EndedAt: 2008-04-09 08:31:17 -0700 (Wed, 09 Apr 2008)
EllapsedTime: 24.8 seconds
RetCode: 0
Status: OK
PackageFile: prism_0.1.2.zip
PackageFileSize: 450.9 KiB

Command output

installing R.css in E:/biocbld/bbs-2.2-bioc/meat/prism.buildbin-libdir

Using auto-selected zip options 'prism-ZIPDATA=zip'

---------- Making package prism ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  making DLL ...
making bisegment.d from bisegment.c
making find_grid.d from find_grid.c
making util.d from util.c
gcc  -std=gnu99  -IE:/biocbld/bbs-2.2-bioc/R/include     -O3 -Wall  -c bisegment.c -o bisegment.o
bisegment.c: In function 'R_link_bisegment':
bisegment.c:144: warning: unused variable 'gamma_start'
bisegment.c:136: warning: unused variable 'bj'
bisegment.c:136: warning: unused variable 'bi'
bisegment.c: In function 'bisegment':
bisegment.c:326: warning: unused variable 'j_end'
bisegment.c:326: warning: unused variable 'j_start'
bisegment.c:325: warning: unused variable 'i_end'
bisegment.c:325: warning: unused variable 'i_start'
bisegment.c:321: warning: unused variable 'stop_criteria_M'
bisegment.c:314: warning: unused variable 'l'
bisegment.c:314: warning: unused variable 'jjj'
bisegment.c:314: warning: unused variable 'iii'
bisegment.c:314: warning: unused variable 'kk'
bisegment.c:460: warning: no return statement in function returning non-void
bisegment.c: In function 'initialize_image':
bisegment.c:633: warning: suggest parentheses around comparison in operand of &
bisegment.c: In function 'up_date_beta_mrf':
bisegment.c:780: warning: suggest parentheses around comparison in operand of &
bisegment.c:780: warning: suggest parentheses around comparison in operand of &
bisegment.c:780: warning: suggest parentheses around comparison in operand of &
bisegment.c:781: warning: suggest parentheses around comparison in operand of &
bisegment.c:784: warning: suggest parentheses around comparison in operand of &
bisegment.c:789: warning: suggest parentheses around comparison in operand of &
bisegment.c:794: warning: suggest parentheses around comparison in operand of &
bisegment.c: In function 'up_date_w':
bisegment.c:874: warning: unused variable 'sum_res'
bisegment.c:873: warning: unused variable 'nb_pixel'
bisegment.c: In function 'compute_difference':
bisegment.c:887: warning: unused variable 'i'
bisegment.c: In function 'compute_uncertainty':
bisegment.c:904: warning: unused variable 'nb_flagged'
bisegment.c:901: warning: unused variable 'jjj'
bisegment.c:901: warning: unused variable 'iii'
bisegment.c: In function 'bisegment_mcmc':
bisegment.c:1000: warning: unused variable 'nb_pix'
bisegment.c:991: warning: unused variable 'rho_new'
bisegment.c:990: warning: unused variable 'log_like_rho_new'
bisegment.c:989: warning: unused variable 'log_like_rho'
bisegment.c:988: warning: unused variable 'nb_spot'
bisegment.c:982: warning: unused variable 'l'
bisegment.c:982: warning: unused variable 'jjj'
bisegment.c:982: warning: unused variable 'iii'
bisegment.c:981: warning: unused variable 'countrho'
bisegment.c:1285: warning: no return statement in function returning non-void
bisegment.c: In function 'slice_sampling_lambda_eps':
bisegment.c:1830: warning: suggest parentheses around comparison in operand of &
bisegment.c:1839: warning: suggest parentheses around comparison in operand of &
bisegment.c: In function 'change_resolution_mcmc':
bisegment.c:2120: warning: suggest parentheses around comparison in operand of &
bisegment.c:2122: warning: suggest parentheses around comparison in operand of &
bisegment.c:2124: warning: suggest parentheses around comparison in operand of &
gcc  -std=gnu99  -IE:/biocbld/bbs-2.2-bioc/R/include     -O3 -Wall  -c find_grid.c -o find_grid.o
find_grid.c: In function 'find_grid':
find_grid.c:12: warning: 'index_min' may be used uninitialized in this function
gcc  -std=gnu99  -IE:/biocbld/bbs-2.2-bioc/R/include     -O3 -Wall  -c util.c -o util.o
util.c: In function 'qr_solve':
util.c:623: warning: implicit declaration of function 'dqrdc2_'
util.c:638: warning: implicit declaration of function 'dqrcf_'
util.c:602: warning: unused variable 'vmax'
util.c: In function 'inverse':
util.c:661: warning: unused variable 'j'
util.c: In function 'product_mat_vec':
util.c:708: warning: unused variable 'k'
util.c: In function 'slice_sampling_phi':
util.c:816: warning: suggest parentheses around comparison in operand of &
util.c:824: warning: suggest parentheses around comparison in operand of &
util.c:798: warning: unused variable 'v'
util.c: In function 'slice_sampling_lxi':
util.c:871: warning: suggest parentheses around comparison in operand of &
util.c:880: warning: suggest parentheses around comparison in operand of &
util.c: In function 'slice_sampling_lambda':
util.c:943: warning: suggest parentheses around comparison in operand of &
util.c:952: warning: suggest parentheses around comparison in operand of &
util.c: In function 'slice_sampling_b':
util.c:1008: warning: suggest parentheses around comparison in operand of &
util.c:1016: warning: suggest parentheses around comparison in operand of &
util.c: In function 'slice_sampling_a':
util.c:1063: warning: suggest parentheses around comparison in operand of &
util.c:1071: warning: suggest parentheses around comparison in operand of &
util.c: In function 'slice_sampling_lxi':
util.c:871: warning: 'J' is used uninitialized in this function
util.c:880: warning: 'K' is used uninitialized in this function
windres --preprocessor="gcc -E -xc -DRC_INVOKED" -I E:/biocbld/bbs-2.2-bioc/R/include  -i prism_res.rc -o prism_res.o
gcc  -std=gnu99  -shared -s  -o prism.dll prism.def bisegment.o find_grid.o util.o prism_res.o  -LE:/biocbld/bbs-2.2-bioc/R/bin    -lR
  ... DLL made
  installing DLL
  installing R files
  installing inst files
  installing data files
  preparing package prism for lazy loading
Loading required package: EBImage
Creating a new generic function for "summary" in "prism"
  installing man source files
  installing indices
  zipping data
  installing help
 >>> Building/Updating help pages for package 'prism'
     Formats: text html latex example chm 
  extractExpression                 text    html    latex   example chm
  formImagePair                     text    html    latex   example chm
  getGrid                           text    html    latex   example chm
  like                              text    html    latex           chm
  plotEstimates                     text    html    latex   example chm
  prism                             text    html    latex   example chm
  prismEstimates-class              text    html    latex   example chm
  prismGrid-class                   text    html    latex   example chm
  prismImage-class                  text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702



Compiling e:\biocbld\bbs-2.2-bioc\meat\R.INSTALL.5468\prism\chm\prism.chm





Compile time: 0 minutes, 0 seconds

10	Topics

53	Local links

0	Internet links

1	Graphic





Created e:\biocbld\bbs-2.2-bioc\meat\R.INSTALL.5468\prism\chm\prism.chm, 28,130 bytes

Compression decreased file by 15,233 bytes.

  adding MD5 sums

packaged installation of package 'prism' as prism_0.1.2.zip
* DONE (prism)