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Package 163/264HostnameOS / ArchBUILDCHECKBUILD BIN
oligoClasses 1.1.18
Benilton Carvalho
Snapshot Date: 2008-04-09 00:13:10 -0700 (Wed, 09 Apr 2008)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/oligoClasses
Last Changed Rev: 30606 / Revision: 30951
Last Changed Date: 2008-03-21 01:53:31 -0700 (Fri, 21 Mar 2008)
lamb1 Linux (SUSE 10.1) / x86_64  OK  WARNINGS 
wilson2 Linux (openSUSE 10.3) / x86_64  OK [ WARNINGS ]
wellington Linux (openSUSE 10.3) / i686  OK  WARNINGS 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  WARNINGS  OK 
pelham Mac OS X Leopard (10.5.1) / i386  OK  WARNINGS  OK 
Package: oligoClasses
Version: 1.1.18
Command: /home/biocbuild/bbs-2.2-bioc/R/bin/R CMD check oligoClasses_1.1.18.tar.gz
StartedAt: 2008-04-09 05:03:38 -0700 (Wed, 09 Apr 2008)
EndedAt: 2008-04-09 05:04:00 -0700 (Wed, 09 Apr 2008)
EllapsedTime: 21.5 seconds
RetCode: 0
Status: WARNINGS
CheckDir: oligoClasses.Rcheck
Warnings: 1

Command output

* checking for working pdflatex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.2-bioc/meat/oligoClasses.Rcheck'
* using R version 2.7.0 beta (2008-04-07 r45159)
* using session charset: ISO8859-1
* checking for file 'oligoClasses/DESCRIPTION' ... OK
* this is package 'oligoClasses' version '1.1.18'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'oligoClasses' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... WARNING
Undocumented S4 classes:
  AffyGeneSTPDInfo GeneSTFeatureSet
All user-level objects in a package (including S4 classes and methods)
should have documentation entries.
See the chapter 'Writing R documentation files' in manual 'Writing R
Extensions'.
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating oligoClasses-Ex.R ... OK
* checking examples ... OK
* creating oligoClasses-manual.tex ... OK
* checking oligoClasses-manual.tex using pdflatex ... OK

WARNING: There was 1 warning, see
  /loc/home/biocbuild/bbs-2.2-bioc/meat/oligoClasses.Rcheck/00check.log
for details

oligoClasses.Rcheck/00install.out:

* Installing *source* package 'oligoClasses' ...
** R
** preparing package for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

** help
Note: removing empty section \author
Note: removing empty section \note
Note: removing empty section \references
Note: removing empty section \seealso
Note: removing empty section \note
Note: removing empty section \references
Note: removing empty section \note
Note: removing empty section \references
Note: removing empty section \author
Note: removing empty section \note
Note: removing empty section \references
Note: removing empty section \seealso
Note: removing empty section \section{Objects from the Class}
Note: removing empty section \author
Note: removing empty section \details
Note: removing empty section \note
Note: removing empty section \references
Note: removing empty section \examples
Note: removing empty section \author
Note: removing empty section \details
Note: removing empty section \note
Note: removing empty section \references
Note: removing empty section \examples
Note: removing empty section \seealso
Note: removing empty section \author
Note: removing empty section \note
Note: removing empty section \references
Note: removing empty section \author
Note: removing empty section \note
Note: removing empty section \references
Note: removing empty section \author
Note: removing empty section \note
Note: removing empty section \references
Note: removing empty section \seealso
 >>> Building/Updating help pages for package 'oligoClasses'
     Formats: text html latex example 
  DBPDInfo-class                    text    html    latex   example
  FeatureSet-class                  text    html    latex
  FeatureSetExtensions-class        text    html    latex   example
  PDInfo-class                      text    html    latex   example
  QuantificationSet-class           text    html    latex   example
  SnpCallSet-methods                text    html    latex
  SnpCallSetPlus-class              text    html    latex   example
  SnpCnvFeatureSet-class            text    html    latex   example
  SnpCnvQSet-class                  text    html    latex   example
  SnpCopyNumberSet-methods          text    html    latex
  SnpLevelSet-class                 text    html    latex
  SnpQSet-class                     text    html    latex   example
  SnpSetExtensions-class            text    html    latex   example
  affyPlatforms                     text    html    latex   example
  calculateCopyNumber               text    html    latex
  chromosome                        text    html    latex
  db                                text    html    latex   example
  oligoSnpSet-methods               text    html    latex
  platformDesign-class              text    html    latex   example
  position                          text    html    latex
** building package indices ...
* DONE (oligoClasses)