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Package 109/264HostnameOS / ArchBUILDCHECKBUILD BIN
graph 1.17.17
Robert Gentleman
Snapshot Date: 2008-04-09 00:13:10 -0700 (Wed, 09 Apr 2008)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/graph
Last Changed Rev: 30294 / Revision: 30951
Last Changed Date: 2008-02-29 10:34:40 -0800 (Fri, 29 Feb 2008)
lamb1 Linux (SUSE 10.1) / x86_64  OK  OK 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
wellington Linux (openSUSE 10.3) / i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.1) / i386  OK [ OK ] OK 
Package: graph
Version: 1.17.17
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check graph_1.17.17.tar.gz
StartedAt: 2008-04-09 05:43:49 -0700 (Wed, 09 Apr 2008)
EndedAt: 2008-04-09 05:44:58 -0700 (Wed, 09 Apr 2008)
EllapsedTime: 69.4 seconds
RetCode: 0
Status: OK
CheckDir: graph.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.2-bioc/meat/graph.Rcheck'
* using R version 2.7.0 beta (2008-04-07 r45159)
* using session charset: ASCII
* checking for file 'graph/DESCRIPTION' ... OK
* this is package 'graph' version '1.17.17'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'graph' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating graph-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating graph-manual.tex ... OK
* checking graph-manual.tex using pdflatex ... OK

graph.Rcheck/00install.out:

* Installing *source* package 'graph' ...
** libs
** arch - i386
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -march=nocona -Wall -c graph.c -o graph.o
gcc-4.2 -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names  -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o graph.so graph.o   -F/Library/Frameworks/R.framework/.. -framework R -lintl -liconv -lc -Wl,-framework -Wl,CoreFoundation
** arch - ppc
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -Wall -c graph.c -o graph.o
gcc-4.2 -arch ppc -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names  -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o graph.so graph.o   -F/Library/Frameworks/R.framework/.. -framework R -lintl -liconv -lc -Wl,-framework -Wl,CoreFoundation
** arch - x86_64
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64  -I/usr/local/include    -fPIC  -g -O2 -Wall -c graph.c -o graph.o
gcc-4.2 -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names  -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o graph.so graph.o   -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** R
** data
** inst
** preparing package for lazy loading
** help
Note: ignoring empty \keyword entries
Note: removing empty section \details
Note: removing empty section \examples
Note: removing empty section \seealso
Note: ignoring empty \keyword entries
 >>> Building/Updating help pages for package 'graph'
     Formats: text html latex example 
  DFS                               text    html    latex   example
  IMCA                              text    html    latex   example
  MAPKsig                           text    html    latex   example
  acc-methods                       text    html    latex   example
  addEdge                           text    html    latex   example
  addNode                           text    html    latex   example
  adj-methods                       text    html    latex   example
  apoptosisGraph                    text    html    latex   example
  attrData-class                    text    html    latex   example
  attrDataItem-methods              text    html    latex
  attrDefaults-methods              text    html    latex
  aveNumEdges                       text    html    latex   example
  biocRepos                         text    html    latex   example
  boundary                          text    html    latex   example
  buildRepDepGraph                  text    html    latex   example
  calcProb                          text    html    latex   example
  calcSumProb                       text    html    latex   example
  clearNode                         text    html    latex   example
  clusterGraph-class                text    html    latex   example
  clusteringCoefficient-methods     text    html    latex   example
  combineNodes                      text    html    latex   example
  distGraph-class                   text    html    latex   example
  duplicatedEdges                   text    html    latex   example
  edgeData-methods                  text    html    latex
  edgeDataDefaults-methods          text    html    latex
  edgeMatrix                        text    html    latex   example
  edgeWeights                       text    html    latex   example
  fromGXL-methods                   text    html    latex   example
  graph-class                       text    html    latex   example
  graph2SparseM                     text    html    latex   example
  graphAM-class                     text    html    latex   example
  graphExamples                     text    html    latex   example
  graphNEL-class                    text    html    latex   example
  graphRendering                    text    html    latex
  inEdges                           text    html    latex   example
  internal                          text    html    latex
  isAdjacent-methods                text    html    latex
  isDirected-methods                text    html    latex
  leaves                            text    html    latex   example
  listEdges                         text    html    latex   example
  matrix2Graph                      text    html    latex   example
  mostEdges                         text    html    latex   example
  multigraph                        text    html    latex
  nodeData-methods                  text    html    latex
  nodeDataDefaults-methods          text    html    latex
  numNoEdges                        text    html    latex   example
  pancrCaIni                        text    html    latex   example
  randomEGraph                      text    html    latex   example
  randomGraph                       text    html    latex   example
  randomNodeGraph                   text    html    latex   example
  removeEdge                        text    html    latex   example
  removeNode                        text    html    latex   example
  renderInfo-class                  text    html    latex   example
  reverseEdgeDirections             text    html    latex   example
  settings                          text    html    latex
  simpleEdge-class                  text    html    latex   example
  standardLabeling                  text    html    latex   example
  subGraph                          text    html    latex   example
  toDotR-methods                    text    html    latex   example
  ugraph                            text    html    latex   example
  validGraph                        text    html    latex   example
  write.tlp                         text    html    latex
** building package indices ...
* DONE (graph)