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Package 83/264HostnameOS / ArchBUILDCHECKBUILD BIN
gaga 0.0.1
David Rossell
Snapshot Date: 2008-04-09 00:13:10 -0700 (Wed, 09 Apr 2008)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/gaga
Last Changed Rev: 30639 / Revision: 30951
Last Changed Date: 2008-03-24 10:46:05 -0700 (Mon, 24 Mar 2008)
lamb1 Linux (SUSE 10.1) / x86_64 [ OK ] WARNINGS 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  WARNINGS 
wellington Linux (openSUSE 10.3) / i686  OK  WARNINGS 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  WARNINGS  OK 
pelham Mac OS X Leopard (10.5.1) / i386  OK  WARNINGS  OK 
Package: gaga
Version: 0.0.1
Command: /home/biocbuild/bbs-2.2-bioc/R/bin/R CMD build gaga
StartedAt: 2008-04-09 03:22:20 -0700 (Wed, 09 Apr 2008)
EndedAt: 2008-04-09 03:22:32 -0700 (Wed, 09 Apr 2008)
EllapsedTime: 11.6 seconds
RetCode: 0
Status: OK
PackageFile: gaga_0.0.1.tar.gz
PackageFileSize: 313.8 KiB

Command output

* checking for file 'gaga/DESCRIPTION' ... OK
* preparing 'gaga':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
* Installing *source* package 'gaga' ...
** libs
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c cseqdesma.c -o cseqdesma.o
cseqdesma.c: In function 'fit_ggC':
cseqdesma.c:1019: warning: unused variable 'malpha0'
cseqdesma.c: In function 'expected_fp':
cseqdesma.c:1667: warning: unused variable 'eps'
cseqdesma.c:1667: warning: unused variable 'err'
cseqdesma.c:1665: warning: unused variable 'interval'
cseqdesma.c: In function 'pp_ggC':
cseqdesma.c:2869: warning: unused variable 'zero'
cseqdesma.c:2869: warning: unused variable 'one'
cseqdesma.c:2869: warning: unused variable 'nobs'
cseqdesma.c:2869: warning: unused variable 'prodpat'
cseqdesma.c:2869: warning: unused variable 'sumpat'
cseqdesma.c:2869: warning: unused variable 'nx'
cseqdesma.c:2869: warning: unused variable 'px'
cseqdesma.c:2869: warning: unused variable 'sx'
cseqdesma.c:2867: warning: unused variable 'group'
cseqdesma.c:4199:1: warning: "/*" within comment
cseqdesma.c:4243:1: warning: "/*" within comment
cseqdesma.c:4295:1: warning: "/*" within comment
cseqdesma.c:4341:1: warning: "/*" within comment
cseqdesma.c: In function 'sampleclas_ggC':
cseqdesma.c:1233: warning: 'sumxpred' is used uninitialized in this function
cseqdesma.c:1233: warning: 'prodxpred' is used uninitialized in this function
cseqdesma.c:1233: warning: 'nobsxpred' is used uninitialized in this function
cseqdesma.c: In function 'simpred_ggC':
cseqdesma.c:3621: warning: 'sumxpred' is used uninitialized in this function
cseqdesma.c:3621: warning: 'prodxpred' is used uninitialized in this function
cseqdesma.c:3621: warning: 'nobsxpred' is used uninitialized in this function
cseqdesma.c: In function 'simpar_ggC':
cseqdesma.c:3435: warning: 'sumxpred' is used uninitialized in this function
cseqdesma.c:3435: warning: 'prodxpred' is used uninitialized in this function
cseqdesma.c:3435: warning: 'nobsxpred' is used uninitialized in this function
cseqdesma.c: In function 'simnewsamples_ggC':
cseqdesma.c:3241: warning: 'sumxpred' is used uninitialized in this function
cseqdesma.c:3241: warning: 'prodxpred' is used uninitialized in this function
cseqdesma.c:3241: warning: 'nobsxpred' is used uninitialized in this function
cseqdesma.c: In function 'pp_ggC':
cseqdesma.c:2869: warning: 'r0' may be used uninitialized in this function
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c cstat.c -o cstat.o
cstat.c: In function 'ludc':
cstat.c:1017: warning: 'imax' may be used uninitialized in this function
cstat.c: In function 'lu_det':
cstat.c:1124: warning: 'indx' is used uninitialized in this function
gcc -std=gnu99 -shared -L/usr/local/lib64 -o gaga.so cseqdesma.o cstat.o   -L/home/biocbuild/bbs-2.2-bioc/R/lib -lR
** R
** inst
** help
Note: removing empty section \examples
Note: removing empty section \examples
Note: removing empty section \examples
Note: removing empty section \examples
Note: removing empty section \examples
 >>> Building/Updating help pages for package 'gaga'
     Formats: text html latex example 
  checkfit                          text    html    latex
  classpred                         text    html    latex   example
  dcgamma                           text    html    latex
  findgenes                         text    html    latex   example
  fit.gg                            text    html    latex   example
  getpar                            text    html    latex
  parest                            text    html    latex   example
  powclasspred                      text    html    latex
  print.gagafit                     text    html    latex
  sim.gg                            text    html    latex   example
  simnewsamples                     text    html    latex
** building package indices ...
* DONE (gaga)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'gaga_0.0.1.tar.gz'