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Package 80/264HostnameOS / ArchBUILDCHECKBUILD BIN
flowQ 0.99.1
N. Le Meur
Snapshot Date: 2008-04-09 00:13:10 -0700 (Wed, 09 Apr 2008)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/flowQ
Last Changed Rev: 30942 / Revision: 30951
Last Changed Date: 2008-04-08 18:13:53 -0700 (Tue, 08 Apr 2008)
lamb1 Linux (SUSE 10.1) / x86_64  OK  OK 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
wellington Linux (openSUSE 10.3) / i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ WARNINGS ] OK 
pelham Mac OS X Leopard (10.5.1) / i386  OK  OK  OK 
Package: flowQ
Version: 0.99.1
Command: E:\biocbld\bbs-2.2-bioc\R\bin\R.exe CMD check flowQ_0.99.1.tar.gz
StartedAt: 2008-04-09 05:55:24 -0700 (Wed, 09 Apr 2008)
EndedAt: 2008-04-09 05:57:06 -0700 (Wed, 09 Apr 2008)
EllapsedTime: 102.0 seconds
RetCode: 0
Status: WARNINGS
CheckDir: flowQ.Rcheck
Warnings: 1

Command output

* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.2-bioc/meat/flowQ.Rcheck'
* using R version 2.7.0 Under development (unstable) (2008-03-10 r44730)
* using session charset: ISO8859-1
* checking for file 'flowQ/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'flowQ' version '0.99.1'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'flowQ' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating flowQ-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... WARNING
Invalid Parameter - 480x480
Invalid Parameter - /test.jpg
Invalid Parameter - 480x480
checkVignettes(dir = 'E:/biocbld/bbs-2.2-bioc/meat/flowQ.Rcheck', workdir='src')
* creating flowQ-manual.tex ... OK
* checking flowQ-manual.tex using pdflatex ... OK

WARNING: There was 1 warning, see
  E:/biocbld/bbs-2.2-bioc/meat/flowQ.Rcheck/00check.log
for details

flowQ.Rcheck/00install.out:

installing R.css in E:/biocbld/bbs-2.2-bioc/meat/flowQ.Rcheck


---------- Making package flowQ ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  installing R files
  installing inst files
  preparing package flowQ for lazy loading
Loading required package: flowCore
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: rrcov
Loading required package: robustbase

Attaching package: 'rrcov'


	The following object(s) are masked from package:stats :

	 biplot,
	 predict,
	 screeplot 

Loading required package: feature
Loading required package: KernSmooth
KernSmooth 2.22 installed
Copyright M. P. Wand 1997
Loading required package: misc3d
Loading required package: rgl

Attaching package: 'flowCore'


	The following object(s) are masked from package:Biobase :

	 description 


	The following object(s) are masked from package:stats :

	 filter 

Loading required package: outliers
Loading required package: flowViz
Loading required package: geneplotter
Loading required package: annotate
Loading required package: AnnotationDbi
Loading required package: DBI
Loading required package: RSQLite
Loading required package: xtable
Loading required package: lattice
Loading required package: MASS
Loading required package: RColorBrewer
  installing man source files
  installing indices
  installing help
 >>> Building/Updating help pages for package 'flowQ'
     Formats: text html latex example chm 
  aggregatorList-class              text    html    latex   example chm
  binaryAggregator-class            text    html    latex   example chm
  discreteAggregator-class          text    html    latex   example chm
  evaluateProcess                   text    html    latex   example chm
  factorAggregator-class            text    html    latex   example chm
  flowQ-package                     text    html    latex   example chm
  numericAggregator-class           text    html    latex   example chm
  outlier-class                     text    html    latex   example chm
  outlierResult-class               text    html    latex   example chm
  outliers-methods                  text    html    latex           chm
  qaAggregator-class                text    html    latex   example chm
  qaGraph-class                     text    html    latex   example chm
  qaGraphList-class                 text    html    latex   example chm
  qaProcess-class                   text    html    latex   example chm
  qaProcess.marginevents            text    html    latex   example chm
  qaProcess.timeline                text    html    latex   example chm
  qaProcessFrame-class              text    html    latex   example chm
  qaReport                          text    html    latex   example chm
  rangeAggregator-class             text    html    latex   example chm
  stringAggregator-class            text    html    latex   example chm
  validProcess                      text    html    latex           chm
  writeQAReport                     text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling e:\biocbld\bbs-2.2-bioc\meat\flowQ.Rcheck\00_pkg_src\flowQ\chm\flowQ.chm


Compile time: 0 minutes, 0 seconds
23	Topics
230	Local links
0	Internet links
1	Graphic


Created e:\biocbld\bbs-2.2-bioc\meat\flowQ.Rcheck\00_pkg_src\flowQ\chm\flowQ.chm, 37,526 bytes
Compression decreased file by 52,211 bytes.
  adding MD5 sums

* DONE (flowQ)