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Package 201/264HostnameOS / ArchBUILDCHECKBUILD BIN
Rdisop 0.99.3
Steffen Neumann
Snapshot Date: 2008-04-09 00:13:10 -0700 (Wed, 09 Apr 2008)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rdisop
Last Changed Rev: 30759 / Revision: 30951
Last Changed Date: 2008-03-31 03:24:47 -0700 (Mon, 31 Mar 2008)
lamb1 Linux (SUSE 10.1) / x86_64  OK  OK 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
wellington Linux (openSUSE 10.3) / i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
pelham Mac OS X Leopard (10.5.1) / i386 N O T   S U P P O R T E D
Package: Rdisop
Version: 0.99.3
Command: E:\biocbld\bbs-2.2-bioc\R\bin\R.exe CMD check Rdisop_0.99.3.tar.gz
StartedAt: 2008-04-09 07:17:51 -0700 (Wed, 09 Apr 2008)
EndedAt: 2008-04-09 07:18:37 -0700 (Wed, 09 Apr 2008)
EllapsedTime: 46.0 seconds
RetCode: 0
Status: OK
CheckDir: Rdisop.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.2-bioc/meat/Rdisop.Rcheck'
* using R version 2.7.0 Under development (unstable) (2008-03-10 r44730)
* using session charset: ISO8859-1
* checking for file 'Rdisop/DESCRIPTION' ... OK
* this is package 'Rdisop' version '0.99.3'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'Rdisop' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating Rdisop-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating Rdisop-manual.tex ... OK
* checking Rdisop-manual.tex using pdflatex ... OK

Rdisop.Rcheck/00install.out:

installing R.css in E:/biocbld/bbs-2.2-bioc/meat/Rdisop.Rcheck


---------- Making package Rdisop ------------
Building libRcpp.a in RcppSrc...
g++ -c Rcpp.cpp -o Rcpp.o -I"e:\biocbld\bbs-2.2-bioc\R/include" -I"e:\biocbld\bbs-2.2-bioc\R/src/include"  -Wall -O2
Rcpp.cpp: In function 'char* copyMessageToR(const char*)':
Rcpp.cpp:884: warning: deprecated conversion from string constant to 'char*'
ar r libRcpp.a Rcpp.o
ranlib libRcpp.a
rm Rcpp.o
Building imslib.dll in src/imslib...
-rwxr-xr-x 1 biocbuild None 2806048 Dec  8 00:09 src/win/libims-0.dll
-rwxr-xr-x 1 biocbuild None 2806048 Dec  8 00:09 src/win/libims.dll
total 5488
-rwxr-xr-x 1 biocbuild None 2806048 Apr  9 07:18 libims-0.dll
-rwxr-xr-x 1 biocbuild None 2806048 Apr  9 07:18 libims.dll
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  making DLL ...
making disop.d from disop.cpp
g++   -Ie:/biocbld/bbs-2.2-bioc/R/include   -I./imslib/src -I../RcppSrc/  -O2 -Wall  -c disop.cpp -o disop.o
disop.cpp: In function 'bool isValidMyNitrogenRule(const ims::ComposedElement&, int)':
disop.cpp:120: warning: unused variable 'parityeven'
disop.cpp: In function 'SEXPREC* decomposeIsotopes(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)':
disop.cpp:205: warning: comparison between signed and unsigned integer expressions
disop.cpp:208: warning: comparison between signed and unsigned integer expressions
disop.cpp:216: warning: comparison between signed and unsigned integer expressions
disop.cpp:216: warning: comparison between signed and unsigned integer expressions
disop.cpp:169: warning: unused variable 'number_molecules_shown'
disop.cpp: In function 'void initializeAlphabet(SEXPREC*, alphabet_t&)':
disop.cpp:726: warning: deprecated conversion from string constant to 'char*'
disop.cpp:727: warning: deprecated conversion from string constant to 'char*'
disop.cpp:729: warning: deprecated conversion from string constant to 'char*'
disop.cpp:731: warning: deprecated conversion from string constant to 'char*'
disop.cpp:732: warning: deprecated conversion from string constant to 'char*'
disop.cpp:733: warning: deprecated conversion from string constant to 'char*'
windres --preprocessor="gcc -E -xc -DRC_INVOKED" -I e:/biocbld/bbs-2.2-bioc/R/include  -i Rdisop_res.rc -o Rdisop_res.o
g++   -shared -s  -o Rdisop.dll Rdisop.def disop.o Rdisop_res.o  -Le:/biocbld/bbs-2.2-bioc/R/bin -L./win -lims -L../RcppSrc/ -lRcpp   -lR
Info: resolving ims::IsotopeDistribution::SIZE      by linking to __imp___ZN3ims19IsotopeDistribution4SIZEE (auto-import)
Info: resolving ims::IsotopeDistribution::ABUNDANCES_SUM_ERROR       by linking to __imp___ZN3ims19IsotopeDistribution20ABUNDANCES_SUM_ERRORE (auto-import)
Info: resolving vtable for ims::Alphabetby linking to __imp___ZTVN3ims8AlphabetE (auto-import)
  ... DLL made
  installing DLL
  installing R files
  installing inst files
  installing man source files
  installing indices
  installing help
 >>> Building/Updating help pages for package 'Rdisop'
     Formats: text html latex example chm 
  RcppVersion                       text    html    latex   example chm
  addMolecules                      text    html    latex   example chm
  decomposeMass                     text    html    latex   example chm
  getMolecule                       text    html    latex   example chm
  initializeCHNOPS                  text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling e:\biocbld\bbs-2.2-bioc\meat\Rdisop.Rcheck\00_pkg_src\Rdisop\chm\Rdisop.chm


Compile time: 0 minutes, 0 seconds
6	Topics
24	Local links
0	Internet links
1	Graphic


Created e:\biocbld\bbs-2.2-bioc\meat\Rdisop.Rcheck\00_pkg_src\Rdisop\chm\Rdisop.chm, 21,253 bytes
Compression decreased file by 1,737 bytes.
  adding MD5 sums

* DONE (Rdisop)