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Package 189/264HostnameOS / ArchBUILDCHECKBUILD BIN
PROcess 1.15.0
Xiaochun Li
Snapshot Date: 2008-04-09 00:13:10 -0700 (Wed, 09 Apr 2008)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/PROcess
Last Changed Rev: 30639 / Revision: 30951
Last Changed Date: 2008-03-24 10:46:05 -0700 (Mon, 24 Mar 2008)
lamb1 Linux (SUSE 10.1) / x86_64  OK  WARNINGS 
wilson2 Linux (openSUSE 10.3) / x86_64  OK [ WARNINGS ]
wellington Linux (openSUSE 10.3) / i686  OK  WARNINGS 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  WARNINGS  OK 
pelham Mac OS X Leopard (10.5.1) / i386  OK  WARNINGS  OK 
Package: PROcess
Version: 1.15.0
Command: /home/biocbuild/bbs-2.2-bioc/R/bin/R CMD check PROcess_1.15.0.tar.gz
StartedAt: 2008-04-09 05:24:40 -0700 (Wed, 09 Apr 2008)
EndedAt: 2008-04-09 05:25:45 -0700 (Wed, 09 Apr 2008)
EllapsedTime: 65.6 seconds
RetCode: 0
Status: WARNINGS
CheckDir: PROcess.Rcheck
Warnings: 1

Command output

* checking for working pdflatex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.2-bioc/meat/PROcess.Rcheck'
* using R version 2.7.0 beta (2008-04-07 r45159)
* using session charset: ISO8859-1
* checking for file 'PROcess/DESCRIPTION' ... OK
* this is package 'PROcess' version '1.15.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'PROcess' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... WARNING
Found the following file(s) with non-portable file names:
  inst/calibration/060503peptidecalib 1_32.csv
  inst/calibration/060503peptidecalib 1_128.csv
  inst/calibration/060503peptidecalib 1_8.csv
  inst/calibration/060503peptidecalib 1_64.csv
  inst/calibration/060503peptidecalib 1_4.csv
  inst/calibration/060503peptidecalib 1_2.csv
  inst/calibration/060503peptidecalib 1_256.csv
  inst/calibration/060503peptidecalib 1_16.csv
  inst/Test/122402imac40-s-c-192combined i11.csv
  inst/Test/122402imac40-s-c-192combined i12.csv
These are not fully portable file names
See section 'Package structure' in manual 'Writing R Extensions'.
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating PROcess-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating PROcess-manual.tex ... OK
* checking PROcess-manual.tex using pdflatex ... OK

WARNING: There was 1 warning, see
  /loc/home/biocbuild/bbs-2.2-bioc/meat/PROcess.Rcheck/00check.log
for details

PROcess.Rcheck/00install.out:

* Installing *source* package 'PROcess' ...
** R
** inst
** preparing package for lazy loading
Loading required package: Icens
Loading required package: survival
Loading required package: splines
** help
 >>> Building/Updating help pages for package 'PROcess'
     Formats: text html latex example 
  align                             text    html    latex
  aveSpec                           text    html    latex   example
  avesd                             text    html    latex
  binning                           text    html    latex
  bslnoff                           text    html    latex   example
  gelmap                            text    html    latex
  getMzs                            text    html    latex
  getPeaks                          text    html    latex   example
  getPeaks2                         text    html    latex
  intg                              text    html    latex   example
  is.multiple                       text    html    latex   example
  isPeak                            text    html    latex   example
  lnn                               text    html    latex
  peaks                             text    html    latex   example
  pk2bmkr                           text    html    latex   example
  quality                           text    html    latex   example
  read.files                        text    html    latex
  renorm                            text    html    latex   example
  rmBaseline                        text    html    latex   example
  specZoom                          text    html    latex   example
** building package indices ...
* DONE (PROcess)