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Package 189/264HostnameOS / ArchBUILDCHECKBUILD BIN
PROcess 1.15.0
Xiaochun Li
Snapshot Date: 2008-04-09 00:13:10 -0700 (Wed, 09 Apr 2008)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/PROcess
Last Changed Rev: 30639 / Revision: 30951
Last Changed Date: 2008-03-24 10:46:05 -0700 (Mon, 24 Mar 2008)
lamb1 Linux (SUSE 10.1) / x86_64  OK  WARNINGS 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  WARNINGS 
wellington Linux (openSUSE 10.3) / i686  OK  WARNINGS 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ WARNINGS ] OK 
pelham Mac OS X Leopard (10.5.1) / i386  OK  WARNINGS  OK 
Package: PROcess
Version: 1.15.0
Command: E:\biocbld\bbs-2.2-bioc\R\bin\R.exe CMD check PROcess_1.15.0.tar.gz
StartedAt: 2008-04-09 07:10:43 -0700 (Wed, 09 Apr 2008)
EndedAt: 2008-04-09 07:12:22 -0700 (Wed, 09 Apr 2008)
EllapsedTime: 98.4 seconds
RetCode: 0
Status: WARNINGS
CheckDir: PROcess.Rcheck
Warnings: 1

Command output

* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.2-bioc/meat/PROcess.Rcheck'
* using R version 2.7.0 Under development (unstable) (2008-03-10 r44730)
* using session charset: ISO8859-1
* checking for file 'PROcess/DESCRIPTION' ... OK
* this is package 'PROcess' version '1.15.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'PROcess' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... WARNING
Found the following file(s) with non-portable file names:
  inst/calibration/060503peptidecalib 1_128.csv
  inst/calibration/060503peptidecalib 1_16.csv
  inst/calibration/060503peptidecalib 1_2.csv
  inst/calibration/060503peptidecalib 1_256.csv
  inst/calibration/060503peptidecalib 1_32.csv
  inst/calibration/060503peptidecalib 1_4.csv
  inst/calibration/060503peptidecalib 1_64.csv
  inst/calibration/060503peptidecalib 1_8.csv
  inst/Test/122402imac40-s-c-192combined i11.csv
  inst/Test/122402imac40-s-c-192combined i12.csv
These are not fully portable file names
See section 'Package structure' in manual 'Writing R Extensions'.
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating PROcess-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating PROcess-manual.tex ... OK
* checking PROcess-manual.tex using pdflatex ... OK

WARNING: There was 1 warning, see
  E:/biocbld/bbs-2.2-bioc/meat/PROcess.Rcheck/00check.log
for details

PROcess.Rcheck/00install.out:

installing R.css in E:/biocbld/bbs-2.2-bioc/meat/PROcess.Rcheck


---------- Making package PROcess ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  installing R files
  installing inst files
  preparing package PROcess for lazy loading
Loading required package: Icens
Loading required package: survival
Loading required package: splines
  installing man source files
  installing indices
  installing help
 >>> Building/Updating help pages for package 'PROcess'
     Formats: text html latex example chm 
  align                             text    html    latex           chm
  aveSpec                           text    html    latex   example chm
  avesd                             text    html    latex           chm
  binning                           text    html    latex           chm
  bslnoff                           text    html    latex   example chm
  gelmap                            text    html    latex           chm
  getMzs                            text    html    latex           chm
  getPeaks                          text    html    latex   example chm
  getPeaks2                         text    html    latex           chm
  intg                              text    html    latex   example chm
  is.multiple                       text    html    latex   example chm
  isPeak                            text    html    latex   example chm
  lnn                               text    html    latex           chm
  peaks                             text    html    latex   example chm
  pk2bmkr                           text    html    latex   example chm
  quality                           text    html    latex   example chm
  read.files                        text    html    latex           chm
  renorm                            text    html    latex   example chm
  rmBaseline                        text    html    latex   example chm
  specZoom                          text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling e:\biocbld\bbs-2.2-bioc\meat\PROcess.Rcheck\00_pkg_src\PROcess\chm\PROcess.chm


Compile time: 0 minutes, 0 seconds
21	Topics
47	Local links
0	Internet links
1	Graphic


Created e:\biocbld\bbs-2.2-bioc\meat\PROcess.Rcheck\00_pkg_src\PROcess\chm\PROcess.chm, 33,806 bytes
Compression decreased file by 17,668 bytes.
  adding MD5 sums

* DONE (PROcess)